Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq130 138 3e-27 seq167 125 2e-23 seq249 122 2e-22 >seq130 Length=530367 Score = 138 bits (152), Expect = 3e-27 Identities = 155/205 (76%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 ||||||||||||||||||| | ||||||||||| |||||||| |||||||||| | Sbjct 8916 TGGAGAGTGGATTCTTTTTAAATATTGTAATCGGATAAAGTTCTTCCATCTTCTAATTAT 8857 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || |||||||| || | || || |||||| || ||||| ||||| ||||||| || ||| Sbjct 8856 TTTCCAGCGAAAATTAATCTTTATTGGTCAGGGGGAATTCCTTCTTTGTCTTAAAT-TTT 8798 Query 225631 TGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || || ||| ||| || | || || | ||| || ||||| || || || || || || Sbjct 8797 AGCTTTGACATTTTCAATAGAATCAGAAGATTCAACATCTAAAGTAATAGTTTTTCCAGT 8738 Query 225690 CAAAGTTTTTATGAACACTTGCATT 225714 || ||||| | ||| | || |||| Sbjct 8737 TAAGGTTTTAACGAAAATTTACATT 8713 Score = 132 bits (146), Expect = 1e-25 Identities = 154/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 ||||||||||||||||||| | ||||||||||| |||||||| |||||||||| | Sbjct 6861 TGGAGAGTGGATTCTTTTTAAATATTGTAATCGGATAAAGTTCTTCCATCTTCTAATTAT 6920 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || |||||||| || | || || ||| || || ||||| ||||| ||||||| || ||| Sbjct 6921 TTTCCAGCGAAAATTAATCTTTATTGATCAGGGGGAATTCCTTCTTTGTCTTAAAT-TTT 6979 Query 225631 TGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || || ||| ||| || | || || | ||| || ||||| || || || || || || Sbjct 6980 AGCTTTGACATTTTCAATAGAATCGGAAGATTCAACATCTAAAGTAATAGTTTTTCCAGT 7039 Query 225690 CAAAGTTTTTATGAACACTTGCATT 225714 || ||||| | ||| | || |||| Sbjct 7040 TAAGGTTTTGACGAAAATTTACATT 7064 Score = 109 bits (120), Expect = 1e-18 Identities = 142/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 225522 TTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAA 225581 |||||||| || ||| ||||| | || ||||| || ||||||| | || || || || Sbjct 9133 TTCTTTTTAGATATTATAATCAGATAAGGTTCTTCCGTCTTCTAATTATTTTCCGGCAAA 9074 Query 225582 GATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC-ACAG 225640 || | || || |||||| || ||||| ||||| || |||| || ||| |||| ||| Sbjct 9073 AATTAATCTTTATTGGTCAGGGGGAATTCCTTCTTTATCTTAAAT-TTTGGCTTTGACAT 9015 Query 225641 CTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTA 225700 ||| |||| || |||| ||| || ||||| || || || || || ||||||||||| | Sbjct 9014 TTTCAATGGAATCAGAGGATTCAACATCTAAAGTAATAGTTTTTCCAGTCAAAGTTTTAA 8955 Query 225701 TGAACACTTGCATT 225714 ||| | || |||| Sbjct 8954 CGAAAATTTACATT 8941 >seq167 Length=324310 Score = 125 bits (138), Expect = 2e-23 Identities = 150/201 (75%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 ||||||||||||| | |||||||| | || ||||| || ||||||| | || ||| Sbjct 152689 GTGGATTCTTTTTAAATGTTGTAATCAGATAAGGTTCTTCCGTCTTCTAATTATTTTCCA 152630 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 ||||| || | || || |||||| || || || ||||| ||||||||||| ||| || || Sbjct 152629 GCGAAAATTAATCTTTATTGGTCAGGGGGGATTCCTTCTTTGTCTTGGAT-TTTAGCTTT 152571 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 || ||| || | ||| |||| ||| ||||| || ||||| || || || || || || Sbjct 152570 GACGTTTTCAATAGAGTCAGAGGATTCGACGTCCAAAGTGATGGTTTTTCCGGTTAAGGT 152511 Query 225696 TTTTATGAACACTTGCATTTT 225716 ||| | ||| | || |||||| Sbjct 152510 TTTAACGAAGATTTACATTTT 152490 Score = 114 bits (126), Expect = 3e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| | |||||||||||||| || ||| || || | |||||||| || ||||||| | Sbjct 152924 GTGTAAAGTGGATTCTTTTTAGATATTATAGTCAGATAAAGTTCTTCCGTCTTCTAATTA 152865 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 || || ||||| || | || || |||||| || ||||| ||||| || |||| || || Sbjct 152864 TTTTCCGGCGAAAATTAATCTTTATTGGTCAGGGGGAATTCCTTCTTTATCTTAAAT-TT 152806 Query 225630 TTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCG 225688 | || || ||| ||| |||| ||| || | ||| || || || || || || || || | Sbjct 152805 TAGCTTTAACATTTTCAATGGAGTCAGAAGATTCAACATCCAAAGTAATAGTTTTTCCGG 152746 Query 225689 TCAAAGTTTTTATGAACACTTGCAT 225713 | |||||||| | ||| | || ||| Sbjct 152745 TTAAAGTTTTAACGAAAATTTACAT 152721 Score = 114 bits (126), Expect = 3e-20 Identities = 148/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| | ||| | ||| | |||||||||||||| || || || || | |||||||| || Sbjct 153164 TCTTAAGACTAAGTGTAAAGTGGATTCTTTTTAGATGTTATAGTCAGATAAAGTTCTTCC 153105 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||||| | || || ||||| || | || || ||| ||||| || || ||||| || Sbjct 153104 GTCTTCTAATTATTTTCCGGCGAAAATTAATCTTTATTGATCGGGGGGGATTCCTTCTTT 153045 Query 225618 GTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGA 225676 ||||| || ||| || || ||| ||| || | ||| || | ||| ||||| || |||| Sbjct 153044 GTCTTAAAT-TTTAGCTTTAACATTTTCAATAGAGTCAGAAGATTCAACGTCCAAAGTGA 152986 Query 225677 TCGTCTTGCCCGTCAAAGTTTT 225698 | || || || || |||||||| Sbjct 152985 TGGTTTTTCCAGTTAAAGTTTT 152964 >seq249 Length=567749 Score = 122 bits (134), Expect = 2e-22 Identities = 149/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 ||||||||||||| || ||||||||| | |||||||| |||||||||| | || || Sbjct 154879 GTGGATTCTTTTTAGATATTGTAATCAGATAAAGTTCTTCCATCTTCTAATTATTTTCCG 154820 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 |||||||| | || || ||| || || || |||||||| || |||| ||| ||| || || Sbjct 154819 GCGAAGATTAATCTTTATTGATCAGGGGGGATACCTTCTTTATCTTAGAT-TTTGGCTTT 154761 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 || |||||| | || || | ||| ||||| | ||||| || || || || | || Sbjct 154760 GACGTTTTCGATAGAATCGGAAGCTTCGACGTCAAGGGTGATAGTTTTCCCGGTAAGGGT 154701 Query 225696 TTTTATGAACACTTGCATTTT 225716 ||| | ||| | || |||||| Sbjct 154700 TTTGACGAAAATTTACATTTT 154680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192526799559872