Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq141 111 2e-19 >seq141 Length=555024 Score = 111 bits (122), Expect = 2e-19 Identities = 115/151 (76%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 77130 AATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCA 77189 ||||||||||| |||||||| | ||| || | |||||| || ||||||| | ||||||| Sbjct 67549 AATTCTCCAGATAATACTCTTCTAGTATATAAATTACTTGTTAATGGTTCAAAAGATTCA 67608 Query 77190 TTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTT 77249 | ||||||| ||||||| ||| |||||| ||||||||||| || | ||| |||| Sbjct 67609 GTATTTCCCATAATTTGACTTGTACTAGCAGTGGGCATAGGTGCAACTAGCAAAGAATTT 67668 Query 77250 CTGAGACCATGTGTTCTGATTTTATCTTTTA 77280 || | ||||| || | |||| || |||| Sbjct 67669 CTCAAACCATTAATTTTTATTTACTCCTTTA 67699 Score = 102 bits (112), Expect = 1e-16 Identities = 179/261 (69%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 78337 TACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAA 78396 |||| || ||||| || || ||| | || | ||||| ||||||| | | | | Sbjct 69088 TACCTTCAATACTATCTTCTTACATTTAAACTAAGAAACAAGAGGACATTTAAGGTTTAG 69147 Query 78397 CAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGAT 78456 ||||| | ||||||||||| |||| |||||| ||||||||||||| | | | | Sbjct 69148 GTGTTCCAGAGTTAAATAATGTAGGAGTTGCATGAGTAAACCATTTTTGACTCATCAACT 69207 Query 78457 TGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCA 78516 ||| |||| || | ||||| || || |||||||||| | || | ||| | Sbjct 69208 CGTAAGTTTTAAACACATTTTCTAAATCATTTTTGTGAATTCCTAAAGAAACTCTCATTA 69267 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 ||||| | |||||| || || | || | | ||| | | ||| || |||||||||| Sbjct 69268 TCATATATTAAGGTCTCTCGACAATTTTTTGGTGAATTCTTAGCAAATAAGATTTTTCCA 69327 Query 78577 AAGTTTTAAAACCAAAATAGT 78597 |||||||||| |||||| ||| Sbjct 69328 AAGTTTTAAACCCAAAAAAGT 69348 Score = 100 bits (110), Expect = 4e-16 Identities = 171/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 78001 TAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTAT 78060 |||| | |||||||||||| || || ||||||| ||| |||||| |||| || |||| Sbjct 68661 TAACCCTTTTCATAAAGAGGTCTGGGATCCATAAAGCGTAAAATAGGTCTCTGGCTCTAA 68720 Query 78061 GTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATG 78120 ||||| ||||| ||| || | | | | ||| || | || |||| ||||| | Sbjct 68721 AATCTTCCTTTCCATGATTTTTCCTTAATTATAAAAAATCAAAAACGTCAGCGTGCCAAG 68780 Query 78121 GTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGG 78180 | |||| ||| || || | | || || || ||||| | ||| | ||||| | Sbjct 68781 GCTCTAAATACATAGCGAAAGACCCTTTTCTCTTTCCTCCTCCTTAATCAACGTATCTAG 68840 Query 78181 CGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAG 78240 |||| | |||||||||| | | ||| |||||||| ||||| || | || || || || Sbjct 68841 CGGTATCATTATAAACTTTAAGCATAGGAATAATTCCGTTTGAAATACCGTTCGTACCTT 68900 Query 78241 AAATATAA 78248 ||||||| Sbjct 68901 TAATATAA 68908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694666299192320