Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq130 104 5e-17 seq249 100 7e-16 seq167 98.7 2e-15 >seq130 Length=530367 Score = 104 bits (114), Expect = 5e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| ||||| || ||||||| || |||||||||| ||||||||| |||||||||| Sbjct 8917 ATGGAGAGTGGATTCTTTTTAAATATTGTAATCGGATAAAGTTCTTCCATCTTCTAATTA 8858 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || ||||| || | || | ||||| | | |||||||| || |||| |||||| Sbjct 8857 TTTTCCAGCGAAAATTAATCTTTATTGGTCAGGGGGAATTCCTTCTTTGTCTTAAATTTT 8798 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||||||| | || | || ||| || || || | |||||||||||| || || Sbjct 8797 AGCTTTGACATTTTCAATAGAATCAGAAGATTCAACATCTAAAGTAATAGTTTTTCCAGT 8738 Query 152081 GAGAGTCTTCACGAA 152095 | || || ||||| Sbjct 8737 TAAGGTTTTAACGAA 8723 Score = 100 bits (110), Expect = 7e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| ||||| || ||||||| || |||||||||| ||||||||| |||||||||| Sbjct 6860 ATGGAGAGTGGATTCTTTTTAAATATTGTAATCGGATAAAGTTCTTCCATCTTCTAATTA 6919 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || ||||| || | || | || || | | |||||||| || |||| |||||| Sbjct 6920 TTTTCCAGCGAAAATTAATCTTTATTGATCAGGGGGAATTCCTTCTTTGTCTTAAATTTT 6979 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||||||| | || | || ||| || || || | |||||||||||| || || Sbjct 6980 AGCTTTGACATTTTCAATAGAATCGGAAGATTCAACATCTAAAGTAATAGTTTTTCCAGT 7039 Query 152081 GAGAGTCTTCACGAA 152095 | || || ||||| Sbjct 7040 TAAGGTTTTGACGAA 7054 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 151914 TCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAG 151973 ||||||| |||||| ||||| | ||||||||| || ||||||| ||| ||||| || Sbjct 6645 TCTTTTTAGATGTTATAATCAGATAAAGTTCTTCCGTCTTCTAATTATTTTCCGGCAAAA 6704 Query 151974 ATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTC 152033 || | || | ||||| | | ||| ||||| || |||| |||||| ||| ||| | Sbjct 6705 ATTAATCTTTATTGGTCAGGGGGGATACCTTCTTTATCTTAAATTTTAGCTTTAACATTT 6764 Query 152034 TCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACG 152093 || | | || ||| || || || | ||||||||||| || || | || || ||| Sbjct 6765 TCAATGGAATCAGAAGATTCAACGTCTAAGGTAATAGTTTTTCCGGTTAAGGTTTTAACG 6824 Query 152094 AA 152095 || Sbjct 6825 AA 6826 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 151914 TCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAG 151973 ||||||| ||| || ||||| | ||| ||||| || ||||||| ||| ||||| || Sbjct 9132 TCTTTTTAGATATTATAATCAGATAAGGTTCTTCCGTCTTCTAATTATTTTCCGGCAAAA 9073 Query 151974 ATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTC 152033 || | || | ||||| | | |||||||| || |||| |||||| ||||||| | Sbjct 9072 ATTAATCTTTATTGGTCAGGGGGAATTCCTTCTTTATCTTAAATTTTGGCTTTGACATTT 9013 Query 152034 TCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACG 152093 || | | || || || || || | |||||||||||| || || | ||| || ||| Sbjct 9012 TCAATGGAATCAGAGGATTCAACATCTAAAGTAATAGTTTTTCCAGTCAAAGTTTTAACG 8953 Query 152094 AA 152095 || Sbjct 8952 AA 8951 >seq249 Length=567749 Score = 100 bits (110), Expect = 7e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || || ||||||| ||| |||||||| | ||||||||| |||||||||| ||| ||| Sbjct 154879 GTGGATTCTTTTTAGATATTGTAATCAGATAAAGTTCTTCCATCTTCTAATTATTTTCCG 154820 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 |||||||| | || | || || | | ||| ||||| || |||| ||||| |||| Sbjct 154819 GCGAAGATTAATCTTTATTGATCAGGGGGGATACCTTCTTTATCTTAGATTTTGGCTTTG 154760 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 || | || | || ||| || || ||||| || |||||||| || || || || Sbjct 154759 ACGTTTTCGATAGAATCGGAAGCTTCGACGTCAAGGGTGATAGTTTTCCCGGTAAGGGTT 154700 Query 152088 TTCACGAAGACCTGCATTTT 152107 || ||||| | | |||||| Sbjct 154699 TTGACGAAAATTTACATTTT 154680 >seq167 Length=324310 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 151907 AGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCC 151966 ||| || ||||||| ||| || || || | ||||||||| || ||||||| ||| || Sbjct 152918 AGTGGATTCTTTTTAGATATTATAGTCAGATAAAGTTCTTCCGTCTTCTAATTATTTTCC 152859 Query 151967 GGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTT 152026 |||||| || | || | ||||| | | |||||||| || |||| |||||| ||| Sbjct 152858 GGCGAAAATTAATCTTTATTGGTCAGGGGGAATTCCTTCTTTATCTTAAATTTTAGCTTT 152799 Query 152027 GACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGT 152086 ||| | || | | ||| ||| || || || | |||||||||||| || || | ||| Sbjct 152798 AACATTTTCAATGGAGTCAGAAGATTCAACATCCAAAGTAATAGTTTTTCCGGTTAAAGT 152739 Query 152087 CTTCACGAA 152095 || ||||| Sbjct 152738 TTTAACGAA 152730 Score = 89.7 bits (98), Expect = 1e-12 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| | ||| | ||| | || || ||||||| ||||||||||| | ||| ||||| || Sbjct 152708 TCTTAAGACTAAATGTAAGGTGGATTCTTTTTAAATGTTGTAATCAGATAAGGTTCTTCC 152649 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 ||||||| ||| || ||||| || | || | ||||| | | ||||||||| || Sbjct 152648 GTCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGGTCAGGGGGGATTCCTTCTTT 152589 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 ||||| ||||| |||||| | || | ||| || || || || | ||| || Sbjct 152588 GTCTTGGATTTTAGCTTTGACGTTTTCAATAGAGTCAGAGGATTCGACGTCCAAAGTGAT 152529 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || || | || || ||||||| | |||||| Sbjct 152528 GGTTTTTCCGGTTAAGGTTTTAACGAAGATTTACATTTT 152490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153816542401248