Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq249 138 3e-27 seq167 127 5e-24 seq130 123 6e-23 seq129 114 3e-20 >seq249 Length=567749 Score = 138 bits (152), Expect = 3e-27 Identities = 190/264 (72%), Gaps = 4/264 (2%) Strand=Plus/Plus Query 177883 AAAATATTTTAAGAAATATATAAA-GTAAGGTTAAAATGC---TCCAAATTTTCGTGAAA 177938 || ||||| || ||||| |||| |||| | ||||| | |||||||||| ||| Sbjct 154641 AATATATTAAAATAAATAAATAATTGTAAATTAAAAATAAAAATGTAAATTTTCGTCAAA 154700 Query 177939 ACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTC 177998 || || || || ||||| |||||||| || || ||| || || | ||||| |||||| Sbjct 154701 ACCCTTACCGGGAAAACTATCACCCTTGACGTCGAAGCTTCCGATTCTATCGAAAACGTC 154760 Query 177999 AAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCC 178058 ||| || || | || |||||||| ||||| || || || || || | ||||||||| Sbjct 154761 AAAGCCAAAATCTAAGATAAAGAAGGTATCCCCCCTGATCAATAAAGATTAATCTTCGCC 154820 Query 178059 GGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACA 178118 |||||| | | ||||||||||| ||| | | ||||| || || |||||||||| || Sbjct 154821 GGAAAATAATTAGAAGATGGAAGAACTTTATCTGATTACAATATCTAAAAAGAATCCACC 154880 Query 178119 CTGCATCTTGTTTTGAGACTCAGA 178142 | || | ||||| ||| | ||| Sbjct 154881 TTACACTTAGTTTTAAGATTAAGA 154904 >seq167 Length=324310 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 177925 AAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACA 177984 |||| ||||| ||||| | || |||||||| ||||| | || || ||| ||| ||| Sbjct 152497 AAATCTTCGTTAAAACCTTAACCGGAAAAACCATCACTTTGGACGTCGAATCCTCTGACT 152556 Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 | || || ||||||||| || || || ||||||||||||||||| || ||||| || Sbjct 152557 CTATTGAAAACGTCAAAGCTAAAATCCAAGACAAAGAAGGAATCCCCCCTGACCAATAAA 152616 Query 178045 GACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCC 178104 || | || ||||| |||||| | | ||||| ||||| || | | ||||| ||| | Sbjct 152617 GATTAATTTTCGCTGGAAAATAATTAGAAGACGGAAGAACCTTATCTGATTACAACATTT 152676 Query 178105 AAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||||| || | ||| | || || ||| | ||| Sbjct 152677 AAAAAGAATCCACCTTACATTTAGTCTTAAGATTGAGA 152714 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 177925 AAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACA 177984 |||||||||| |||||| | || |||||||| || || | || || ||| || ||| Sbjct 152725 AAATTTTCGTTAAAACTTTAACCGGAAAAACTATTACTTTGGATGTTGAATCTTCTGACT 152784 Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 |||| || || || ||| || ||| | || ||||||||||| || || ||||| || Sbjct 152785 CCATTGAAAATGTTAAAGCTAAAATTTAAGATAAAGAAGGAATTCCCCCTGACCAATAAA 152844 Query 178045 GACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCC 178104 || | || |||||||||||| | | ||||| ||||| ||| | | || ||||| || Sbjct 152845 GATTAATTTTCGCCGGAAAATAATTAGAAGACGGAAGAACTTTATCTGACTATAATATCT 152904 Query 178105 AAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||||| || | || | ||||| ||| | ||| Sbjct 152905 AAAAAGAATCCACTTTACACTTAGTTTTAAGATTGAGA 152942 Score = 123 bits (136), Expect = 6e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 177925 AAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACA 177984 ||||||| || |||||| | || |||||||| ||||| | || || ||| || ||| Sbjct 152953 AAATTTTTGTCAAAACTTTAACTGGAAAAACCATCACTTTGGACGTTGAATCTTCTGACT 153012 Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 | || || || || ||| || ||| | ||||||||||||||||| || || || || Sbjct 153013 CTATTGAAAATGTTAAAGCTAAAATTTAAGACAAAGAAGGAATCCCCCCCGATCAATAAA 153072 Query 178045 GACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCC 178104 || | || |||||||||||| | | ||||| ||||| ||| | | || |||||| || Sbjct 153073 GATTAATTTTCGCCGGAAAATAATTAGAAGACGGAAGAACTTTATCTGACTATAACATCT 153132 Query 178105 AAAAAGAATCAAC 178117 |||||||||| || Sbjct 153133 AAAAAGAATCCAC 153145 >seq130 Length=530367 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 177925 AAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACA 177984 |||||||||| ||||| | || |||||||| || || | || || ||| || || Sbjct 8718 AAATTTTCGTTAAAACCTTAACTGGAAAAACTATTACTTTAGATGTTGAATCTTCTGATT 8777 Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 | || || || |||||| || ||| | |||||||||||||| || || ||||| || Sbjct 8778 CTATTGAAAATGTCAAAGCTAAAATTTAAGACAAAGAAGGAATTCCCCCTGACCAATAAA 8837 Query 178045 GACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCC 178104 || | || ||||| |||||| | | ||||||||||| ||| | ||||||| || | Sbjct 8838 GATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCCGATTACAATATTT 8897 Query 178105 AAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||||| || || ||| | || || ||| | ||| Sbjct 8898 AAAAAGAATCCACTCTCCATTTAGTATTAAGATTAAGA 8935 Score = 118 bits (130), Expect = 3e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 177925 AAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACA 177984 |||||||||| ||||| | || |||||||| || || | || || ||| || || Sbjct 7059 AAATTTTCGTCAAAACCTTAACTGGAAAAACTATTACTTTAGATGTTGAATCTTCCGATT 7000 Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 | || || || |||||| || ||| | |||||||||||||| || || || || || Sbjct 6999 CTATTGAAAATGTCAAAGCTAAAATTTAAGACAAAGAAGGAATTCCCCCTGATCAATAAA 6940 Query 178045 GACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCC 178104 || | || ||||| |||||| | | ||||||||||| ||| | ||||||| || | Sbjct 6939 GATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCCGATTACAATATTT 6880 Query 178105 AAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||||| || || ||| | || || ||| | ||| Sbjct 6879 AAAAAGAATCCACTCTCCATTTAGTATTAAGATTAAGA 6842 Score = 114 bits (126), Expect = 3e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177925 AAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACA 177984 |||||||||| ||||| | || |||||||| || || | || || ||| || || Sbjct 6603 AAATTTTCGTCAAAACCTTAACTGGAAAAACCATTACTTTAGACGTTGAATCTTCTGATT 6544 Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 |||| || || || ||| || ||| | |||||||||||||| || || || || || Sbjct 6543 CCATTGAAAATGTTAAAGCTAAAATTTAAGACAAAGAAGGAATTCCCCCTGATCAATAAA 6484 Query 178045 GACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCC 178104 || | || ||||| |||||| | | ||||||||||| ||| | | ||||||||| || Sbjct 6483 GATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCTGATTATAACATCT 6424 Query 178105 AAAAAGAA 178112 |||||||| Sbjct 6423 AAAAAGAA 6416 Score = 114 bits (126), Expect = 3e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 177925 AAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACA 177984 |||||||||| |||||| | || |||||||| || || | || || ||| ||| || Sbjct 8946 AAATTTTCGTTAAAACTTTGACTGGAAAAACTATTACTTTAGATGTTGAATCCTCTGATT 9005 Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 |||| || || |||||| || ||| | || ||||||||||| || || ||||| || Sbjct 9006 CCATTGAAAATGTCAAAGCCAAAATTTAAGATAAAGAAGGAATTCCCCCTGACCAATAAA 9065 Query 178045 GACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCC 178104 || | || || ||||||||| | | ||||| ||||| || | | |||||||| || Sbjct 9066 GATTAATTTTTGCCGGAAAATAATTAGAAGACGGAAGAACCTTATCTGATTATAATATCT 9125 Query 178105 AAAAAGAA 178112 |||||||| Sbjct 9126 AAAAAGAA 9133 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 |||| || ||||| ||| || ||| | || |||||||| ||||| || ||||| || Sbjct 13699 CCATTGAAAACGTTAAAGGTAAAATTTAAGATAAAGAAGGTATCCCCCCTGACCAATAAA 13758 Query 178045 GACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCC 178104 || | || ||||| |||||| | | ||||| ||||| ||| | ||||||||||| | Sbjct 13759 GATTAATTTTCGCTGGAAAAAAATTAGAAGACGGAAGAACTTTATCCGATTATAACATTT 13818 Query 178105 AAAAAGAA 178112 |||||||| Sbjct 13819 AAAAAGAA 13826 >seq129 Length=365655 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 177925 AAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACA 177984 |||||| ||| |||||| | || |||||||| ||||||||| | || ||| ||||| | Sbjct 253313 AAATTTACGTAAAAACTTTAACGGGAAAAACAATCACCCTCTACGTAGAAGCTTCAGAGA 253254 Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 | || || | || |||| |||||| |||||||||||| || || ||||| || Sbjct 253253 CAATAGAAATTTGTAAGAAAAAAATTCAGAGCAAAGAAGGAATTCCGCCTGACCAATAAA 253194 Query 178045 GACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCC 178104 | ||||| || || ||| || || | ||||| | | | | | | ||| | ||||| | Sbjct 253193 GGCTTATTTTTGCGGGACAATAGTTGGAAGACGAAGGAAGTTTAGCCTAATATAAAATAT 253134 Query 178105 AAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||| || |||| | ||||||||||| ||| Sbjct 253133 AAAAAGAAAGCACTTTGCACTTGGTTTTGAGACTTAGA 253096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203726758231872