Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1 147 2e-30 seq7 102 8e-17 seq12 84.2 2e-11 >seq1 Length=11360811 Score = 147 bits (162), Expect = 2e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || ||||||||| | || || || || || Sbjct 4842293 ATGCAGATTTTCGTCAAGACCCTCACAGGGAAGACCATCACCCTGGAAGTTGAGGCTTCC 4842234 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | |||| ||| |||| ||||| ||||| |||||| | |||||| Sbjct 4842233 GACACTATTGAAAATGTGAAGGCAAAGATTCAAGACAAGGAGGGGATCCCCCCCGACCAG 4842174 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | ||||||| ||| |||||||| ||||| |||| | || ||| |||||||||| Sbjct 4842173 CAGAGGCTCATCTTCGCCGGCAAACAACTGGAAGACGGCAGAACTCTCTCCGACTACAAC 4842114 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||| |||| || ||||| || Sbjct 4842113 ATCCAGAAGGAATCCACCCTTCATCTCGT 4842085 >seq7 Length=4216856 Score = 102 bits (112), Expect = 8e-17 Identities = 164/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| || || || ||||||||||| | || || || | | Sbjct 3942672 ATGCAAATTTTTGTGAAAACCCTTACAGGAAAAACCATCACACTAGAAGTAGAGCCGTCT 3942731 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||| ||||||| || ||||| |||||||| | ||||| Sbjct 3942732 GATACGATCGAGAATGTGAAGGCTAAAATTCAAGATAAAGAAGGCATCCCTCCTGACCAA 3942791 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || || ||||||||||| || | | || || ||||||||| Sbjct 3942792 CAGAGGCTGATCTTTGCAGGGAAACAGCTGGAAGATGGCAGAACACTATCGGACTACAAC 3942851 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTT--GAGGGGCGGCGGCTT 40922 || ||||||||| | || || ||| | |||||| | || |||| | ||||||| Sbjct 3942852 ATTCAGAAGGAGTCTACTCTTCATTTGGTGTTGAGATTACGAGGTGGTGCGGCTT 3942906 >seq12 Length=3345923 Score = 84.2 bits (92), Expect = 2e-11 Identities = 116/157 (74%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 117043 GGTGGCCTTC-GCGGCCGTCGAGGGCGT-CTTCTTTTCGGGCAGTTTCGCCGCCATATTT 117100 |||||||||| || || ||||||||| | ||| || |||| |||||| ||| || | Sbjct 981783 GGTGGCCTTCTGCTGC-GTCGAGGGCATTCTTTTTAGCGGG-AGTTTCTGCGCTATCTAC 981840 Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160 ||||| || |||||||| || ||||| || || || || ||||||||||| || | Sbjct 981841 TGGCTAAAAAAACGCGGACTAATGCCGGGACTTACATTTTCGAACGAGCTCATTTCGCGC 981900 Query 117161 GACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGT 117197 ||||||||| | ||| || ||||| || | |||| Sbjct 981901 GACGAGGGTTTACATGCAGATTTTGCATGCCTACTGT 981937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515213590550960