Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq7 132 7e-26 >seq7 Length=4216856 Score = 132 bits (146), Expect = 7e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || || ||||| ||||| || || |||| | || | | Sbjct 3942672 ATGCAAATTTTTGTGAAAACCCTTACAGGAAAAACCATCACACTAGAAGTAGAGCCGTCT 3942731 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | || |||||||||||||||||||| || || ||||| ||| Sbjct 3942732 GATACGATCGAGAATGTGAAGGCTAAAATTCAAGATAAAGAAGGCATCCCTCCTGACCAA 3942791 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || |||||||| ||||| | || ||| | ||||| || || || || Sbjct 3942792 CAGAGGCTGATCTTTGCAGGGAAACAGCTGGAAGATGGCAGAACACTATCGGACTACAAC 3942851 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 ||||| || || || ||| | |||||||| || | |||||||||||| Sbjct 3942852 ATTCAGAAGGAGTCTACTCTTCATTTGGTGTTGAGATTACGAGGTGGT 3942899 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 |||||||| || || |||||||| || || || |||||| | ||||||||||||||||| Sbjct 3942300 AAAATTCAGGACAAGGAAGGTATTCCGCCAGACCAACAACGTCTTATTTTTGCAGGAAAG 3942359 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||| | ||||| | |||| || ||||| || ||||| ||||||||||| | || Sbjct 3942360 CAACTGGAGGACGGAAGAACGTTGTCCGATTACAACATTCAGAAAGAATCAACACTTCAC 3942419 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| | || || || || || || Sbjct 3942420 TTGGTACTTCGATTGCGTGGAGGAAT 3942445 Score = 89.7 bits (98), Expect = 8e-13 Identities = 163/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | || || ||||| ||||| || || || ||||| | || | Sbjct 3942443 AATGCAGATTTTCGTGAAAACCCTAACTGGCAAGACGATTACGCTAGAGGTGGAGCCGTC 3942502 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| | || | || |||||| ||||| |||||||| || ||||||||||| Sbjct 3942503 GGATACGGTAGAGAACGTGAAGACGAAAATACAAGACAAAGAAGGGATTCCACCTGATCA 3942562 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | | || || || ||||| ||| | || ||| | |||||||| || || || Sbjct 3942563 GCAGCGTTTGATCTTCGCTGGAAAGCAACTGGATGATGGAAGAACATTATCTGACTACAA 3942622 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||| || ||||| || | || ||||| ||||| | || || || || ||| || Sbjct 3942623 CATTCAGAAGGAATCGACCCTTCACTTGGTGTTACGACTGCGTGGCGGGATGCAAATTT 3942681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755447774972800