Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq7 109 5e-19 seq1 86.0 5e-12 >seq7 Length=4216856 Score = 109 bits (120), Expect = 5e-19 Identities = 157/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 118527 AACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-GCTCATAGTGCGCGTATC 118585 ||||||||||| | || || || || ||||||||||| || | | || || | ||| Sbjct 3942655 AACACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGATAAT-GTTCTTCCATC 3942597 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || || || ||||||||| |||| | |||||||||||| || || || || || ||||| Sbjct 3942596 ATCCAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGTGGAATCCCTTCTTTGTC 3942537 Query 118646 T-GTAATTTTTTGT-TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 | ||| |||| || || || | || || || |||| ||| ||||| | || | | Sbjct 3942536 TTGTA--TTTTCGTCTTCACGTTCTCTACCGTATCCGACGGCTCCACCTCTAGCGTAATC 3942479 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || ||||| || ||||||||||| Sbjct 3942478 GTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCAT 3942444 Score = 107 bits (118), Expect = 2e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || ||||||||||||||||| || | |||||||| || ||||||||||| | | Sbjct 3942899 ACCACCTCGTAATCTCAACACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGT--CC 3942842 Query 118571 CATAGTG--CGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGA 118628 |||||| | ||| || |||||||| || || |||| || | ||| || || ||| Sbjct 3942841 GATAGTGTTCTGCCATCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGTTGGTCAGGA 3942782 Query 118629 GGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCG 118688 || ||||| || || ||| |||||| || || | |||| || || | ||| Sbjct 3942781 GGGATGCCTTCTTTATCTTGAATTTTAGCCTTCACATTCTCGATCGTATCAGACGGCTCT 3942722 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | ||||| || || || ||||| |||||||| ||||| Sbjct 3942721 ACTTCTAGTGTGATGGTTTTTCCTGTAAGGGTTTTCACAAAAATTTGCAT 3942672 >seq1 Length=11360811 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || || |||||||| ||| | ||| | || || || ||||| || Sbjct 4842097 GTGGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCTGCCGTCTTCCAGTTGTTTGCCG 4842156 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| ||||||| | |||||| ||||| || || |||||||||||| ||| ||| || Sbjct 4842157 GCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTGAATCTTTGCCTTC 4842216 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||| | ||||| | ||| || || | ||| | || || || || || || Sbjct 4842217 ACATTTTCAATAGTGTCGGAAGCCTCAACTTCCAGGGTGATGGTCTTCCCTGTGAGGGTC 4842276 Query 118722 TTTACAAAAATCTGCAT 118738 || || ||||||||||| Sbjct 4842277 TTGACGAAAATCTGCAT 4842293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433825794754732