Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq12 125 6e-24 seq1 122 8e-23 seq7 86.0 6e-12 >seq12 Length=3345923 Score = 125 bits (138), Expect = 6e-24 Identities = 119/151 (79%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 23031 CAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGAT 23090 |||| ||||| || ||||| || || ||| | |||||| |||||||| ||||||| || Sbjct 1181633 CAAG-TTGCAGACAGCCACTTCATCCTTGCTGGCGTACTCAACAATTTCTGTACATAAAT 1181691 Query 23091 TGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGT 23150 |||||| || || ||||| | || |||||||||| |||| |||||| | ||||||| Sbjct 1181692 TGCTACCTTTGATGGTGCCAAGGTTCTTCTGGTTGCTCTTTCTATTGCAGGCGTCCTTGT 1181751 Query 23151 AGAGCATGTACGGCGTGCCCGTCTCGACCTG 23181 | | |||||||||||| || ||||||| ||| Sbjct 1181752 ACATCATGTACGGCGTCCCTGTCTCGATCTG 1181782 Score = 91.5 bits (100), Expect = 1e-13 Identities = 114/151 (75%), Gaps = 8/151 (5%) Strand=Plus/Plus Query 57992 CGTCGAAGGTATATTCTTTT---CGGGCAGCTT-TGCGGCAATATTTTGGATGAAGAAAC 58047 |||||| || || |||||| |||| || || |||| | || | ||| | || |||| Sbjct 981798 CGTCGAGGGCAT--TCTTTTTAGCGGG-AGTTTCTGCG-CTATCTACTGGCTAAAAAAAC 981853 Query 58048 GCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCC 58107 |||| || ||||| || || || ||| |||||| | || ||||||||||||||| | | Sbjct 981854 GCGGACTAATGCCGGGACTTACATTTTCGAACGAGCTCATTTCGCGCGACGAGGGTTTAC 981913 Query 58108 ATACTGATTTTGCGTGCCTAATGTACTCTCA 58138 || | |||||||| |||||| ||||||| || Sbjct 981914 ATGCAGATTTTGCATGCCTACTGTACTCCCA 981944 >seq1 Length=11360811 Score = 122 bits (134), Expect = 8e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || ||||| || || |||||| | || ||||| | ||| Sbjct 4842293 ATGCAGATTTTCGTCAAGACCCTCACAGGGAAGACCATCACCCTGGAAGTTGAGGCTTCC 4842234 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | |||| || || || ||| | | ||||||| || | || |||||||| Sbjct 4842233 GACACTATTGAAAATGTGAAGGCAAAGATTCAAG-ACAAGGAGGGGATCCCCCCCGACCA 4842175 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || ||||| |||||||| |||||||| | ||| | ||| || || Sbjct 4842174 GCAGAGGCTCATCTTCGCCGGCAAACAACTGGAAGACGGCAGAACTCTCTCCGACTACAA 4842115 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTA 31402 ||| || || ||||| || |||||||| ||| Sbjct 4842114 CATCCAGAAGGAATCCACCCTTCATCTCGTA 4842084 >seq7 Length=4216856 Score = 86.0 bits (94), Expect = 6e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 |||||||||||| | ||||| ||||| || ||||| || || || || || || |||| Sbjct 3942308 GGACAAGGAAGGTATTCCGCCAGACCAACAACGTCTTATTTTTGCAGGAAAGCAACTGGA 3942367 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| | || || |||||| |||||||| |||||||| || ||||| ||||||| Sbjct 3942368 GGACGGAAGAACGTTGTCCGATTACAACATTCAGAAAGAATCAACACTTCACTTGGTACT 3942427 Query 31405 TAGACTGAGGGGCGG 31419 | || || | || || Sbjct 3942428 TCGATTGCGTGGAGG 3942442 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || || || ||||| ||||| ||||| | || || || ||||| Sbjct 3942672 ATGCAAATTTTTGTGAAAACCCTTACAGGAAAAACCATCACACTAGAAGTAGAGCCGTCT 3942731 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || | ||| || || |||||| | || || ||||| Sbjct 3942732 GATACGATCGAGAATGTGAAGGCTAAAATTCAAGATAAAGAAGGCATCCCTCCTGACCAA 3942791 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || || |||||| ||||||| | || | || || ||| Sbjct 3942792 CAGAGGCTGATCTTTGCAGGGAAACAGCTGGAAGATGGCAGAACACTATCGGACTACAAC 3942851 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||| || || || ||||||||| |||| Sbjct 3942852 ATTCAGAAGGAGTCTACTCTTCATTTGGT 3942880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445761546718320