Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq7 170 4e-37 seq1 149 1e-30 >seq7 Length=4216856 Score = 170 bits (188), Expect = 4e-37 Identities = 156/197 (79%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || |||||||| || ||||| ||||| ||||| || ||||| || ||||| || Sbjct 3942868 GTAGACTCCTTCTGAATGTTGTAGTCCGATAGTGTTCTGCCATCTTCCAGCTGTTTCCCT 3942809 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || ||||||||||| |||||||| || ||||||||||| ||||| || || || Sbjct 3942808 GCAAAGATCAGCCTCTGTTGGTCAGGAGGGATGCCTTCTTTATCTTGAATTTTAGCCTTC 3942749 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||||| || ||||| |||||||| || || || || ||||| ||| Sbjct 3942748 ACATTCTCGATCGTATCAGACGGCTCTACTTCTAGTGTGATGGTTTTTCCTGTAAGGGTT 3942689 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 3942688 TTCACAAAAATTTGCAT 3942672 Score = 113 bits (124), Expect = 1e-19 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 |||||| | || | ||| |||||||||||||| || || || || | ||||| ||||| Sbjct 3942428 AAGTACCAAGTGAAGTGTTGATTCTTTCTGAATGTTGTAATCGGACAACGTTCTTCCGTC 3942369 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || ||||| ||||| |||||||| || | ||||| || || || || ||||| || || Sbjct 3942368 CTCCAGTTGCTTTCCTGCAAAAATAAGACGTTGTTGGTCTGGCGGAATACCTTCCTTGTC 3942309 Query 104467 CTGAATCTTTGCTTTTACATTTTCT 104491 |||||| |||||||| || || ||| Sbjct 3942308 CTGAATTTTTGCTTTCACGTTCTCT 3942284 Score = 93.3 bits (102), Expect = 1e-13 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496 ||||||||| || || || ||||| || || || || || || || || ||||| | || Sbjct 3940737 CTGTTGATCGGGTGGAATCCCTTCCTTGTCTTGGATTTTCGCCTTCACGTTTTCGATCGT 3940678 Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556 |||| || || ||||| | || |||||||| ||||| |||||||| || || ||||| Sbjct 3940677 ATCGGAGGGCTCCACCTCCAAAGTGATAGTCTTCCCAGTCAGTGTTTTCACGAAGATCTG 3940618 Query 104557 CATTTT 104562 |||||| Sbjct 3940617 CATTTT 3940612 >seq1 Length=11360811 Score = 149 bits (164), Expect = 1e-30 Identities = 165/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| ||||| | || ||||| ||||| || || ||||| || |||||||| |||||||| Sbjct 4842084 TACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCTGCCGTCTTC 4842143 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 |||||||| || || || || |||||||| || || || || || || || || || || Sbjct 4842144 CAGTTGTTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTG 4842203 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||||||||| || |||||||| | || ||| || || || || || || || ||||| Sbjct 4842204 AATCTTTGCCTTCACATTTTCAATAGTGTCGGAAGCCTCAACTTCCAGGGTGATGGTCTT 4842263 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGTACA 104569 || || || || || || || |||||||| || ||||| Sbjct 4842264 CCCTGTGAGGGTCTTGACGAAAATCTGCATCGTGGGTACA 4842303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151385550753668