Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq7 138 1e-27 >seq7 Length=4216856 Score = 138 bits (152), Expect = 1e-27 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| |||| ||||||||| || | |||||| ||||| || | ||| || || Sbjct 3942898 CCACCTCGTAATCTCAACACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCG-- 3942841 Query 94841 ATAGTGTT--GGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 |||||||| | ||| ||||||||||| || ||||||| | || || || || |||| Sbjct 3942840 ATAGTGTTCTGCCATCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGTTGGTCAGGAG 3942781 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | || |||||||| || | |||||| ||||| || ||| || |||| | || | Sbjct 3942780 GGATGCCTTCTTTATCTTGAATTTTAGCCTTCACATTCTCGATCGTATCAGACGGCTCTA 3942721 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | |||||||||||||| ||||| ||||||||||| || ||||| Sbjct 3942720 CTTCTAGTGTGATGGTTTTTCCTGTAAGGGTTTTCACAAAAATTTGCAT 3942672 Score = 114 bits (126), Expect = 1e-20 Identities = 180/254 (71%), Gaps = 3/254 (1%) Strand=Plus/Minus Query 94756 TAACGGTTTTTT-AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAG 94814 ||| |||||| |||| ||| || || || | || ||| ||||||||||| | || | Sbjct 3942696 TAAGGGTTTTCACAAAAATTTGCATCCCGCCACGCAGTCGTAACACCAAGTGAAGGGTCG 3942637 Query 94815 ATTCCTTTTGCACGTTATAATC-GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCA 94873 ||||||| || | ||| || || | | || | || | || ||||| || ||||| | Sbjct 3942636 ATTCCTTCTGAATGTTGTAGTCAGATAATGTTCTTCCA-TCATCCAGTTGCTTTCCAGCG 3942578 Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 ||||| || | |||||||| || ||||| ||||||||||| | ||||| | ||| ||| Sbjct 3942577 AAGATCAAACGCTGCTGATCAGGTGGAATCCCTTCTTTGTCTTGTATTTTCGTCTTCACG 3942518 Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993 | || || || | | || || || | ||| || || || ||||| || |||||| Sbjct 3942517 TTCTCTACCGTATCCGACGGCTCCACCTCTAGCGTAATCGTCTTGCCAGTTAGGGTTTTC 3942458 Query 94994 ACAAAGATCTGCAT 95007 || || |||||||| Sbjct 3942457 ACGAAAATCTGCAT 3942444 Score = 95.1 bits (104), Expect = 1e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| | | || |||||| | |||||| | |||||||| | || ||||| || || | | Sbjct 3942454 AAAATCTGCATTCCTCCACGCAATCGAAGTACCAAGTGAAGTGTTGATTCTTTCTGAATG 3942395 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || |||||| || || | |||||||| || ||||| |||| || | | ||| Sbjct 3942394 TTGTAATCGGACAACGTTCTTCCGTCCTCCAGTTGCTTTCCTGCAAAAATAAGACGTTGT 3942335 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 || ||||| ||||||||||| ||||| | ||||||||| || ||| Sbjct 3942334 TGGTCTGGCGGAATACCTTCCTTGTCCTGAATTTTTGCTTTCACG 3942290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448286319229560