Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq18 114 1e-20 seq1 89.7 5e-13 >seq18 Length=2561326 Score = 114 bits (126), Expect = 1e-20 Identities = 211/305 (69%), Gaps = 6/305 (2%) Strand=Plus/Plus Query 71672 ACGCATGATGAACTATGGAATGCTGCTCAGCGACAGCTACGCAATGAGGGTAAAATTCAC 71731 ||| |||| | ||||||||||| || |||| |||||| | || || || || ||| Sbjct 1981672 ACGTATGACGCGCTATGGAATGCAGCGCAGCAGCAGCTAATGAGGGAAGGAAAGATGCAC 1981731 Query 71732 GGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGCAG 71791 || || || || ||||||||||| || ||||| || ||||||| || | || | || Sbjct 1981732 GGCTATCTGCGTATGTACTGGGCGAAGAAGATGCTGGAGTGGATGAAATCGCCTGCTGAG 1981791 Query 71792 GCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTAAC 71851 || || | | |||| || | || |||| |||||| || ||||| ||||| ||| Sbjct 1981792 GCACTTGCGGGAGCTATACATTTGAATGATAAATACAGCCTGGACGGGACGGATCCCAAC 1981851 Query 71852 GGTTATGTCGGTTGCATGTGGAGCATTTGCGG-TCTTCACGATAGAAGCTTTT--TAGAA 71908 ||||| ||||| ||||||||| | | |||| ||| |||| | ||| ||| ||| Sbjct 1981852 GGTTACGTCGGATGCATGTGG-TCGATCGCGGCTCTGCACG--ACCAGCCTTTCAGAGAG 1981908 Query 71909 CGTCAAGTGTTTGGTAAAATTCGCTATATGAATCGTAATGGTTGCGAACGCAAGTTCAAT 71968 | | | | ||| || || | |||||||| ||||||| || | ||||||||| Sbjct 1981909 AGACCCATATATGGGAAGGTTAGGTATATGAACTACGCTGGTTGCCAAAGGAAGTTCAAT 1981968 Query 71969 GTGAA 71973 || || Sbjct 1981969 GTAAA 1981973 >seq1 Length=11360811 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || || || | |||||| | ||| | || | | Sbjct 4842293 ATGCAGATTTTCGTCAAGACCCTCACAGGGAAGACCATCACCCTGGAAGTTGAGGCTTCC 4842234 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | || || ||||||| ||||| || ||||| || ||||| || Sbjct 4842233 GACACTATTGAAAATGTGAAGGCAAAGATTCAAGACAAGGAGGGGATCCCCCCCGACCAG 4842174 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || ||||| | || |||||||||||| ||||| | |||| || |||||| ||| Sbjct 4842173 CAGAGGCTCATCTTCGCCGGCAAACAACTGGAAGACGGCAGAACTCTCTCCGACTACAAC 4842114 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGT 26977 || || || ||||| || | ||||| || Sbjct 4842113 ATCCAGAAGGAATCCACCCTTCATCTCGT 4842085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478657188563120