Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq7 116 3e-21 seq1 116 3e-21 >seq7 Length=4216856 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||||| |||| |||| ||| || || |||||||| || ||||||||||| | Sbjct 3942898 CCACCTCGTAATCTCAACACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAT 3942839 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| || | || |||| ||||| || ||| | || |||| ||||||||| ||| Sbjct 3942838 AGTGTTCTGCCATCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGTTGGTCAGGAGGG 3942779 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| ||||| || ||||| |||||| | | | || || ||||| | Sbjct 3942778 ATGCCTTCTTTATCTTGAATTTTAGCCTTCACATTCTCGATCGTATCAGACGGCTCTACT 3942719 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||||||||| || || ||||| |||||||| ||||| Sbjct 3942718 TCTAGTGTGATGGTTTTTCCTGTAAGGGTTTTCACAAAAATTTGCAT 3942672 >seq1 Length=11360811 Score = 116 bits (128), Expect = 3e-21 Identities = 154/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 16726 TACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTC 16785 ||| | ||| || ||||| ||||| || ||||||||||||| | ||| || |||| || Sbjct 4842084 TACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCTGCCGTCTTC 4842143 Query 16786 CAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGC 16845 || ||||||||| || | || |||| ||| ||||| || | ||||| ||||| Sbjct 4842144 CAGTTGTTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTG 4842203 Query 16846 AA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || ||||| |||||| | | | ||||||| | ||| ||||| ||||||||| Sbjct 4842204 AATCTTTGC--CTTCACATTTTCAATAGTGTCGGAAGCCTCAACTTCCAGGGTGATGGTC 4842261 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || || || ||||| ||||||||||| Sbjct 4842262 TTCCCTGTGAGGGTCTTGACGAAAATCTGCAT 4842293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405083699864290