Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq7 118 7e-22 seq89 100 2e-16 >seq7 Length=4216856 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||||| || | |||||||||||||||||| |||||| ||||| ||||| || || Sbjct 3942899 ACCACCTCGTAATCTCAACACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGA 3942840 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | | | || || | ||||| || ||||| || || | ||||| || | || Sbjct 3942839 TAGTGTTCTGCCATCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGTTGGTCAGGAGG 3942780 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || ||||||||| || |||||| ||||||||||| || ||||| || || Sbjct 3942779 GATGCCTTCTTTATCTTGAATTTTAGCCTTCACATTCTCGATCGTATCAGACGGCTCTAC 3942720 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| ||| || ||||| || || | ||||||||| || || ||||| Sbjct 3942719 TTCTAGTGTGATGGTTTTTCCTGTAAGGGTTTTCACAAAAATTTGCAT 3942672 Score = 98.7 bits (108), Expect = 7e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 || |||||||| ||||| || ||||| ||||| ||||| ||||| || | | | Sbjct 3942658 CGTAACACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGATAATGTTCTTCCA 3942599 Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 || || | ||| ||||| || || || | || || ||||| | || | ||||||||| Sbjct 3942598 TCATCCAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGTGGAATCCCTTCTTTG 3942539 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT-TCAACTTCTAATGTAAT 38281 || ||||| |||||| |||| || ||||| | || || || |||| ||||| Sbjct 3942538 TCTTGTATTTTCGTCTTCACGTTCTCTACCGTATC-CGACGGCTCCACCTCTAGCGTAAT 3942480 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || | |||||||||||| |||||||| Sbjct 3942479 CGTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCAT 3942444 >seq89 Length=5757 Score = 100 bits (110), Expect = 2e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | ||||| ||||||| ||||||||||||||||||||| |||||||||||||| Sbjct 2568 CTCTCTTTCCAAAGAACTTTTCATCTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCGC 2627 Query 20007 GGTAATATTTAGCCTTAT 20024 | |||||||||| |||| Sbjct 2628 GCCAATATTTAGCTTTAT 2645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334943644430801