Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq7 127 2e-24 seq1 105 6e-18 seq18 91.5 1e-13 >seq7 Length=4216856 Score = 127 bits (140), Expect = 2e-24 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || | || || ||| |||||||| | ||||| ||| ||||| Sbjct 3942672 ATGCAAATTTTTGTGAAAACCCTTACAGGAAAAACCATCACACTAGAAGTAGAGCCGTCT 3942731 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || |||||| ||||| | |||| ||| || |||||||| || || |||||||| Sbjct 3942732 GATACGATCGAGAATGTGAAGGCTAAAATTCAA-GATAAAGAAGGCATCCCTCCTGACCA 3942790 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATG--ATCGCACTGTGGGCGATTAC 25175 |||| || | || ||||| || ||||| | ||||||| | |||| | | || ||| Sbjct 3942791 ACAGAGGCTGATCTTTGCAGGGAAACAGCTGGAAGATGGCAGAACACTATCG--GACTAC 3942848 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| || || || || || ||||| ||| | || || |||| || Sbjct 3942849 AACATTCAGAAGGAGTCTACTCTTCATTTGGTGTTGAGATTACGAGGTGG 3942898 >seq1 Length=11360811 Score = 105 bits (116), Expect = 6e-18 Identities = 158/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || || || ||||| | || || || ||||||| | ||||| ||| | Sbjct 4842296 ACGATGCAGATTTTCGTCAAGACCCTCACAGGGAAGACCATCACCCTGGAAGTTGAGGCT 4842237 Query 25056 TCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || |||||||| || ||||| |||| | ||| ||||| || ||||| || || || Sbjct 4842236 TCCGACACTATTGAAAATGTGAAGGCAAAGATTCAA-GACAAGGAGGGGATCCCCCCCGA 4842178 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| || | || || |||||||||||| | ||||| | | ||| | ||| || Sbjct 4842177 CCAGCAGAGGCTCATCTTCGCCGGCAAACAACTGGAAGACGGCAGAACTCTCTCCGACTA 4842118 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGT--GCTAAG 25213 ||| || || || |||||||| || ||| | || |||||| Sbjct 4842117 CAACATCCAGAAGGAATCCACCCTTCATCTCGTAAGCTAAG 4842077 >seq18 Length=2561326 Score = 91.5 bits (100), Expect = 1e-13 Identities = 181/262 (69%), Gaps = 16/262 (6%) Strand=Plus/Minus Query 50983 ACGTTAAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTTG 51042 || || ||||| | | || || ||||||||||||||||| | | ||| | || Sbjct 1981970 ACATTGAACTTCCTTTGGCAACCAGCGTAGTTCATATACCTAACCTTCCCATATATGGGT 1981911 Query 51043 CGTTCTTTGAACGGCCTGTCGTGCACA-CCGCAAATTGACCACATACAACCCACATAATT 51101 | ||| |||| ||| |||||||| | |||| || |||||||| || || || ||| Sbjct 1981910 CTCTCTCTGAAAGGCTGGTCGTGCAGAGCCGC-GATCGACCACATGCATCCGACGTAACC 1981852 Query 51102 GTTAGGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAA-TG 51160 ||| ||||| || |||| |||||| | ||| || | | ||| || | | ||| || Sbjct 1981851 GTTGGGATCCGTCCCGTCCAGGCTGTATTTATCATTCAAATGTATAGC-TCCCGCAAGTG 1981793 Query 51161 CCATGTCTGCACTAGGCG------TCCATTCCATAATTTTCTTGGCCCAGTACATGCGCA 51214 || || || ||||| |||| |||| || ||||| ||||||||||| |||| Sbjct 1981792 CC---TCAGC---AGGCGATTTCATCCACTCCAGCATCTTCTTCGCCCAGTACATACGCA 1981739 Query 51215 TGTAACCGTGCATCTTGCCCTC 51236 || ||||||||||| || || Sbjct 1981738 GATAGCCGTGCATCTTTCCTTC 1981717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433323400087865