Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq7 116 3e-21 seq1 104 2e-17 seq12 95.1 1e-14 >seq7 Length=4216856 Score = 116 bits (128), Expect = 3e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 22302 AAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAA 22361 ||||||||| |||||||| |||||||| || || |||||||||||||| ||||| || || Sbjct 3942299 AAAAATTCAGGACAAGGAAGGTATTCCGCCAGACCAACAACGTCTTATTTTTGCAGGAAA 3942358 Query 22362 ACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACA 22421 || | ||||| | || | ||||||||||||||||| |||||||| || | || Sbjct 3942359 GCAACTGGAGGACGGAAGAACGTTGTCCGATTACAACATTCAGAAAGAATCAACACTTCA 3942418 Query 22422 TTTAGTTTTGCGATTGCGCGGAGG 22445 || || | |||||||| ||||| Sbjct 3942419 CTTGGTACTTCGATTGCGTGGAGG 3942442 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||||||||| ||||| | || || ||||| |||| || ||||| || | | Sbjct 3942671 GATGCAAATTTTTGTGAAAACCCTTACAGGAAAAACCATCACACTAGAAGTAGAGCCGTC 3942730 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||||| | || || | || ||||||||||| || || || || || || || || Sbjct 3942731 TGATACGATCGAGAATGTGAAGGCTAAAATTCAAGATAAAGAAGGCATCCCTCCTGACCA 3942790 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| | || || ||||| || |||||| | || ||| | | || | || || ||||| Sbjct 3942791 ACAGAGGCTGATCTTTGCAGGGAAACAGCTGGAAGATGGCAGAACACTATCGGACTACAA 3942850 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||| || || || || | ||||| || ||| |||| || || ||| Sbjct 3942851 CATTCAGAAGGAGTCTACTCTTCATTTGGTGTTGAGATTACGAGGTGGT 3942899 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || ||||| |||| || || ||| | || || || ||||| | | Sbjct 3942444 ATGCAGATTTTCGTGAAAACCCTAACTGGCAAGACGATTACGCTAGAGGTGGAGCCGTCG 3942503 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| || || | | || ||||| |||||||| || || |||||||| ||||| Sbjct 3942504 GATACGGTAGAGAACGTGAAGACGAAAATACAAGACAAAGAAGGGATTCCACCTGATCAG 3942563 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || || || | || ||| | || | || || |||||| Sbjct 3942564 CAGCGTTTGATCTTCGCTGGAAAGCAACTGGATGATGGAAGAACATTATCTGACTACAAC 3942623 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || ||||| ||| | || || || || ||| |||| || || Sbjct 3942624 ATTCAGAAGGAATCGACCCTTCACTTGGTGTTACGACTGCGTGGCGG 3942670 >seq1 Length=11360811 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| ||||| || || || | || || || || |||| || ||||| || | | Sbjct 4842294 GATGCAGATTTTCGTCAAGACCCTCACAGGGAAGACCATCACCCTGGAAGTTGAGGCTTC 4842235 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| || | || || | || ||| ||||||||||||||||| || || ||||| || Sbjct 4842234 CGACACTATTGAAAATGTGAAGGCAAAGATTCAAGACAAGGAGGGGATCCCCCCCGACCA 4842175 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || || ||||||||||| | || || | | || ||||||| ||||| Sbjct 4842174 GCAGAGGCTCATCTTCGCCGGCAAACAACTGGAAGACGGCAGAACTCTCTCCGACTACAA 4842115 Query 22398 CATTCAAAAAGAATCCACCATACAT 22422 ||| || || ||||||||| | ||| Sbjct 4842114 CATCCAGAAGGAATCCACCCTTCAT 4842090 >seq12 Length=3345923 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/154 (75%), Gaps = 6/154 (4%) Strand=Plus/Plus Query 129700 GAGGCCAAATTGCAGACGGC-ACTT--TCGTTTTTGTCACTGTACTCGACAATTTCGGCG 129756 || ||||| |||||||| || |||| || || || | |||||| |||||||| | Sbjct 1181628 GACGCCAAGTTGCAGACAGCCACTTCATCCTTGCTGGC---GTACTCAACAATTTCTGTA 1181684 Query 129757 CACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCA 129816 || ||||| ||| ||| |||||||| | | ||| || || || || | ||||| || Sbjct 1181685 CATAAATTGCTACCTTTGATGGTGCCAAGGTTCTTCTGGTTGCTCTTTCTATTGCAGGCG 1181744 Query 129817 TCTTTGTACATCATGTACGGCGTGCCCGTTTCGA 129850 || |||||||||||||||||||| || || |||| Sbjct 1181745 TCCTTGTACATCATGTACGGCGTCCCTGTCTCGA 1181778 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 129723 TTCGTTTTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCC 129782 ||||| | || || | ||||||| | ||||| ||| | || | ||| || || || Sbjct 1219147 TTCGTCTCTGCCAGTAAACTCGACCACTTCGGTGCATAGGTTGCCGCATTTTATCGTCCC 1219088 Query 129783 CAAATGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCC 129842 || || ||| || || || ||| | |||||||| |||||||||||||| ||||| ||||| Sbjct 1219087 CAGATTCTTCTGGTTGCTCTTCTTATTGCAAGCGTCTTTGTACATCATATACGGAGTGCC 1219028 Query 129843 CGTTTC 129848 ||||| Sbjct 1219027 TGTTTC 1219022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419723544456115