Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1 136 9e-27 seq7 104 6e-17 >seq1 Length=11360811 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 288264 TACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTC 288323 ||||||||||| ||| ||| || ||||| || ||||||| ||| || | |||||||| Sbjct 4842084 TACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCTGCCGTCTTC 4842143 Query 288324 TAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTG 288383 | |||||| || |||||||| || | ||| || ||||| || || || || || Sbjct 4842144 CAGTTGTTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTG 4842203 Query 288384 GATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTT 288443 || || || ||||| ||||| |||| ||| | || ||||| || ||||| ||||| Sbjct 4842204 AATCTTTGCCTTCACATTTTCAATAGTGTCGGAAGCCTCAACTTCCAGGGTGATGGTCTT 4842263 Query 288444 CCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || || ||||||||||| |||||||| Sbjct 4842264 CCCTGTGAGGGTCTTGACGAAAATCTGCAT 4842293 >seq7 Length=4216856 Score = 104 bits (114), Expect = 6e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || | ||| | || | ||||| || || || || || || ||||| | Sbjct 3942898 CCACCTCGTAATCTCAACACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAT 3942839 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | || ||||| | ||||| ||||| |||||||| | |||||| | ||| Sbjct 3942838 AGTGTTCTGCCATCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGTTGGTCAGGAGGG 3942779 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||||||||| || ||||| || ||||| || || || | ||| || |||||| Sbjct 3942778 ATGCCTTCTTTATCTTGAATTTTAGCCTTCACATTCTCGATCGTATCAGACGGCTCTACT 3942719 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || || || || || || || || || || ||||| Sbjct 3942718 TCTAGTGTGATGGTTTTTCCTGTAAGGGTTTTCACAAAAATTTGCAT 3942672 Score = 98.7 bits (108), Expect = 2e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 |||||||||||| ||| || ||||| || || ||||||||||| ||||||||||| Sbjct 3940742 AGACGCTGTTGATCGGGTGGAATCCCTTCCTTGTCTTGGATTTTCGCCTTCACGTTTTCG 3940683 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || | |||| | || || || | ||||| |||||||| ||||| || || ||||| Sbjct 3940682 ATCGTATCGGAGGGCTCCACCTCCAAAGTGATAGTCTTCCCAGTCAGTGTTTTCACGAAG 3940623 Query 288466 ATCTGCATT 288474 ||||||||| Sbjct 3940622 ATCTGCATT 3940614 Score = 87.8 bits (96), Expect = 4e-12 Identities = 118/163 (72%), Gaps = 6/163 (4%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || | || |||||| | |||| || |||||| || || || || |||| Sbjct 3942443 TCCTCCACGCAATCGAAGTACCAAGTGAAGTGTTGATTCTTTCTGAATGTTGTAATCGGA 3942384 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | ||| | |||||| || | ||| |||||||| || || ||||| ||||| ||||| Sbjct 3942383 CAACGTTCTTCCGTCCTCCAGTTGCTTTCCTGCAAAAATAAGACGTTGTTGG---TCTGG 3942327 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 || ||||| || ||||| ||||| ||||||||||| ||| Sbjct 3942326 CGGAATACCTTCCTTGTCCTGAATTTTTGCTTTCACGTTCTCT 3942284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179641235425538