Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq7 122 9e-23 seq1 107 2e-18 seq12 84.2 2e-11 >seq7 Length=4216856 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || ||||| | ||| | ||||| || || || || ||||||||||| || | Sbjct 3942899 ACCACCTCGTAATCTCAACACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGA 3942840 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || | | ||||| ||||| || || ||| | || |||| ||| ||||| ||||| Sbjct 3942839 TAGTGTTCTGCCATCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGTTGGTCAGGAGG 3942780 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCAC-CGGCGTCCA 64394 || |||||||| ||||| ||||| ||| ||| ||| | |||||| |||| || | Sbjct 3942779 GATGCCTTCTTTATCTTGAATTTTAGCCTTCACATTCTCGATCGTATCAGACGGC-TCTA 3942721 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| || | ||| || || || | ||||| || ||||||||||| Sbjct 3942720 CTTCTAGTGTGATGGTTTTTCCTGTAAGGGTTTTCACAAAAATTTGCAT 3942672 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| |||| || | ||| | |||| |||||||| || ||||||||||| || | Sbjct 3942670 CCGCCACGCAGTCGTAACACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGAT 3942611 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | | || || || ||||| || || | || | |||||||| || || ||| Sbjct 3942610 AATGTTCTTCCATCATCCAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGTGGA 3942551 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTAT-CACCGGCGTCCAC 64395 || |||||||| ||||||||||| ||| || ||| || |||| | |||| ||||| Sbjct 3942550 ATCCCTTCTTTGTCTTGTATTTTCGTCTTCACGTTCTCTACCGTATCCGACGGC-TCCAC 3942492 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||| || | |||||||| || | ||||| |||||||| |||||| Sbjct 3942491 CTCTAGCGTAATCGTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCATT 3942443 Score = 96.9 bits (106), Expect = 3e-15 Identities = 112/150 (75%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || ||||||| ||| || | |||| || |||||||| |||||||||||||| | Sbjct 3942442 CCTCCACGCAATCGAAGTACCAAGTGAAGTGTTGATTCTTTCTGAATGTTGTAATCGGAC 3942383 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | |||| || || ||||| || ||| |||| || || || ||||| || ||| Sbjct 3942382 AACGTTCTTCCGTCCTCCAGTTGCTTTCCTGCAAAAATAAGACGTTGTTGGTCTGGCGGA 3942323 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || ||||| || || || | |||||||||| Sbjct 3942322 ATACCTTCCTTGTCCTG-AATTTTTGCTTT 3942294 >seq1 Length=11360811 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||||| || ||||| || || |||||||| || | || || | ||||||| Sbjct 4842085 ACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCTGCCGTCTTCC 4842144 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 || || |||||||| | ||||||| |||||||||||| || || || || || ||||| Sbjct 4842145 AGTTGTTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTGA 4842204 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 || ||| ||| ||| || | || || || || ||||| | || | |||||| Sbjct 4842205 ATCTTTGCCTTCACATTTTCAATAGTGTCGGAAGCCTCAACTTCCAGGGTGATGGTCTTC 4842264 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || | || || |||||||| ||||| Sbjct 4842265 CCTGTGAGGGTCTTGACGAAAATCTGCAT 4842293 >seq12 Length=3345923 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 154582 ACACAGACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTG 154641 ||| ||||||||||||||| || || | ||| || || ||| | |||||||||| Sbjct 1181623 ACAGAGACGCCAAGTTGCAGACAGCCACTTCATCCTTGCTGGCGTACTCAACAATTTCTG 1181682 Query 154642 CGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATG 154701 || ||||| || | | |||||||| ||||| ||||| || || | ||||| | Sbjct 1181683 TACATAAATTGCTACCTTTGATGGTGCCAAGGTTCTTCTGGTTGCTCTTTCTATTGCAGG 1181742 Query 154702 CGTCTTTGTACAAAATGTACGGGGTGCCCGTTTC 154735 |||| ||||||| |||||||| || || || || Sbjct 1181743 CGTCCTTGTACATCATGTACGGCGTCCCTGTCTC 1181776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499639360117240