Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq7 102 8e-17 >seq7 Length=4216856 Score = 102 bits (112), Expect = 8e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446 ||||| |||| || || || || || | | | || ||||| |||||||||||||| | | Sbjct 3942670 CCGCCACGCAGTCGTAACACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGAT 3942611 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || | | | || || ||||| || || | |||| | |||||| || || || || Sbjct 3942610 AATGTTCTTCCA-TCATCCAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGTGG 3942552 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCA 138565 || ||||||||||| || |||| || || | | || || || || | || ||||| Sbjct 3942551 AATCCCTTCTTTGTCT-TGTATTTTCGTCTTCACGTTCTCTACCGTATCCGACGGCTCCA 3942493 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | ||| | ||| || ||||| || ||||| || ||||||||||| Sbjct 3942492 CCTCTAGCGTAATCGTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCAT 3942444 Score = 98.7 bits (108), Expect = 1e-15 Identities = 168/237 (71%), Gaps = 5/237 (2%) Strand=Plus/Minus Query 138380 AGCCGCAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGT 138439 ||||||| || ||||| || | ||| || ||||| | | |||||||| |||||||||| Sbjct 3942905 AGCCGCA-CCACCTCGTAATCTCAACACCAAATGAAGAGTAGACTCCTTCTGAATGTTGT 3942847 Query 138440 AGT-CGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGG 138498 ||| || | | | || | || || || ||||| || | | |||| || | ||||||| Sbjct 3942846 AGTCCGATAGTGTTCTGCCA-TCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGTTGG 3942788 Query 138499 TCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGT 138557 || ||||| || |||||||| || ||| |||| | || | | || | || || | Sbjct 3942787 TCAGGAGGGATGCCTTCTTTATC-TTGAATTTTAGCCTTCACATTCTCGATCGTATCAGA 3942729 Query 138558 CGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || ||| || || | || | ||||| || || || ||||| |||||||| ||||| Sbjct 3942728 CGGCTCTACTTCTAGTGTGATGGTTTTTCCTGTAAGGGTTTTCACAAAAATTTGCAT 3942672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496256996943120