Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq7 105 6e-18 seq12 86.0 6e-12 >seq7 Length=4216856 Score = 105 bits (116), Expect = 6e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 |||||||| | ||| || || || ||||| || || || || || | ||| | | Sbjct 3942886 CTCAACACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGATAGTGTTCTGCCA 3942827 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||| ||||| ||||| | |||| | || ||||| || || |||||||||||| Sbjct 3942826 TCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGTTGGTCAGGAGGGATGCCTTCTTTA 3942767 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||||||||| || | || | || || || | ||| ||||| || || | Sbjct 3942766 TCTTGAATTTTAGCCTTCACATTCTCGATCGTATCAGACGGCTCTACTTCTAGTGTGATG 3942707 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 ||||| || || || ||||| ||||||||||||||| ||| || Sbjct 3942706 GTTTTTCCTGTAAGGGTTTTCACAAAAATTTGCATCCCGCCAC 3942664 >seq12 Length=3345923 Score = 86.0 bits (94), Expect = 6e-12 Identities = 113/153 (74%), Gaps = 4/153 (3%) Strand=Plus/Minus Query 123604 TCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGA 123663 |||| || || |||||||||||| | ||||| ||||||||||| || || | ||| |||| Sbjct 1181778 TCGAGACAGGGACGCCGTACATGATGTACAAGGACGCCTGCAATAGAAAGAGCAACCAGA 1181719 Query 123664 GCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATG 123723 ||| | || || || ||| |||| ||| | || | |||||| | || ||| || | | Sbjct 1181718 AGAACCTTGGCACCATCAAAGGTAGCAATTTATGTACAGAAATTGTTGAGTAC-GCCA-G 1181661 Query 123724 C--CGATCAAGTGGCCGTGTGTAATTTGGCTTC 123754 | ||| ||||||| || || || ||||| || Sbjct 1181660 CAAGGATGAAGTGGCTGTCTGCAACTTGGCGTC 1181628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451998278815160