Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq7 122 3e-22 seq1 122 3e-22 >seq7 Length=4216856 Score = 122 bits (134), Expect = 3e-22 Identities = 159/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | |||||||| ||||| || ||||| || || ||||| || || || || | || Sbjct 3942443 AATGCAGATTTTCGTGAAAACCCTAACTGGCAAGACGATTACGCTAGAGGTGGAGCCGTC 3942502 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| | || | || ||||| ||||| || ||||| ||||| |||||||| Sbjct 3942503 GGATACGGTAGAGAACGTGAAGACGAAAATACAAGACAAAGAAGGGATTCCACCTGATCA 3942562 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || ||||| || ||| | || || ||||| || ||||||||||| || | || || || Sbjct 3942563 GCAGCGTTTGATCTTCGCTGGAAAGCAACTGGATGATGGAAGAACATTATCTGACTACAA 3942622 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTG 391268 ||| | ||||| | || |||||||| || ||| ||||| Sbjct 3942623 CATTCAGAAGGAATCGACCCTTCACTTGGTGTTACGACTG 3942662 Score = 116 bits (128), Expect = 1e-20 Identities = 160/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || ||||| || || || ||||| || || || || || || | ||| Sbjct 3942672 ATGCAAATTTTTGTGAAAACCCTTACAGGAAAAACCATCACACTAGAAGTAGAGCCGTCT 3942731 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || || | | || |||||||||||||| ||||| || |||||||| ||| Sbjct 3942732 GATACGATCGAGAATGTGAAGGCTAAAATTCAAGATAAAGAAGGCATCCCTCCTGACCAA 3942791 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || || |||||||||| || |||||||| ||||| | |||| || || Sbjct 3942792 CAGAGGCTGATCTTTGCAGGGAAACAGCTGGAAGATGGCAGAACACTATCGGACTACAAC 3942851 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 ||| | ||||| | || ||||| || || || ||| | |||| Sbjct 3942852 ATTCAGAAGGAGTCTACTCTTCATTTGGTGTTGAGATTACGAGG 3942895 Score = 114 bits (126), Expect = 5e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 391133 AAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAA 391192 ||||||||| || |||||||| ||||| || || ||||||||| | ||||| |||| || Sbjct 3942299 AAAAATTCAGGACAAGGAAGGTATTCCGCCAGACCAACAACGTCTTATTTTTGCAGGAAA 3942358 Query 391193 ACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCA 391252 ||||| || || |||||||| ||| | ||||| || ||| | || || |||||||||| Sbjct 3942359 GCAACTGGAGGACGGAAGAACGTTGTCCGATTACAACATTCAGAAAGAATCAACACTTCA 3942418 Query 391253 CTTAGTATTAAGACTGAGAGGATAAATACATTTTTT 391288 ||| ||| | || || | ||| ||| || |||| Sbjct 3942419 CTTGGTACTTCGATTGCGTGGAGGAATGCAGATTTT 3942454 >seq1 Length=11360811 Score = 122 bits (134), Expect = 3e-22 Identities = 185/261 (71%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 451193 GGAAAGCC-CTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGA 451251 || ||||| ||| || |||| |||| |||| || || ||| ||| ||||| || Sbjct 5454327 GGCAAGCCACTA-ATCGAAGTGCATTACCAAGGAGAGACGAAATGTTTCCACCCTGAGGA 5454269 Query 451252 AATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCC 451311 ||||| | ||||| || || |||||||||| | ||| || ||||| || Sbjct 5454268 GATTTCTGCGATGGTGCTGGGCAAGATGAAAGAAATTTCGGAATCTTACCTTGGTCGCCC 5454209 Query 451312 AGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371 ||| | || || || || || || ||||| |||||||||||| | || || ||||| || Sbjct 5454208 AGTGAAAGAAGCGGTTATCACGGTGCCCGCGTATTTCAATGATTCTCAGCGCCAAGCCAC 5454149 Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431 |||||||| || ||||| ||||| || || ||||||||||| || || || || || Sbjct 5454148 AAAAGATGCTGGCACGATTGCAGGTTTGAACGTACTTCGAATTATCAACGAGCCAACTGC 5454089 Query 451432 AGCTGCTCTAGCATATGGACT 451452 |||||| | || ||||| || Sbjct 5454088 AGCTGCAATTGCGTATGGTCT 5454068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975696351600068