Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1 217 1e-50 >seq1 Length=11360811 Score = 217 bits (240), Expect = 1e-50 Identities = 929/1456 (64%), Gaps = 34/1456 (2%) Strand=Plus/Plus Query 517244 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 517303 || ||||| || |||| ||||| | | ||| || || || ||||| ||||| || ||| Sbjct 5453135 GTGGATTTGTCCTCGGCTGTCACGCTCATAATGCCGTTTGCGTCCAAGTCAAACGTAACT 5453194 Query 517304 TCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGA 517363 ||||| || || || || | | || || ||||| || |||| | ||| | |||| | Sbjct 5453195 TCAATCTGCGGAACTCCCCGGGGGGCGGGAGGGATGCCATCCAGGTGGAATTTACCCAAA 5453254 Query 517364 TTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTT 517423 ||| || ||||| || | | |||||||| ||||| | || || || | | Sbjct 5453255 AGATTGTTGTCTTTCGTCAGTGGACGTTCACCTTCGAAGACCTGAATGAGCACCCCGGGC 5453314 Query 517424 TGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTA 517483 |||||||| || || || ||||| | | || || || ||| || || || || | | Sbjct 5453315 TGATTATCAGAGTACGTCGTAAAGATTTGCGACTTCTTTGTAGGGATCGTCGTATTCCGA 5453374 Query 517484 TCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACA 517543 ||||| | ||||| | ||||| || ||||||| || || ||||| || | ||| Sbjct 5453375 GGAATAAGTGTAGTCATGACGCCACCGGCAGTTTCTAGTCCGAGGGAAAGTGGCGCCACA 5453434 Query 517544 TCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGA 517603 || | |||| | | || | || || ||| | |||||| ||||| Sbjct 5453435 TCGAGGAGGAGCAACTGCTGTACTTGAGAGCTGGTGACACCCTTGATAATAGCGGCTTGC 5453494 Query 517604 ATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCA 517663 | ||||| ||||| || || |||||||| || || | | ||| |||||| Sbjct 5453495 ACTGCAGCGCCATACGCGACGGCTTCATCGGGGTTGATGGACCGGCAGGGTTCTTTACCG 5453554 Query 517664 TTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAAT 517723 ||||| || | | || | ||| | || ||||| | | || || || || | | Sbjct 5453555 TTGAAGAATTCGGTAATGAATTGCTGGATTTTCGGAATTCTCGTGGACCCCCCGACCAGT 5453614 Query 517724 ACAATTTCATGCACCTGTGATTTATCCAGTTTT-GAATCCAATAAAACTTTTTCAACGGG 517782 |||| ||| || || | | |||| | || || || || || || || Sbjct 5453615 ACAACTTCGCTTAC-TGAGCGCTTGTCAGTACCAGCGTCTTTCAACACCTTCTCGACCGG 5453673 Query 517783 TTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGT 517842 || || | || |||| ||||||||||| || || | || ||| Sbjct 5453674 GTCCAGCGAGTGACGGAAGTAGTCCATGCAAAGTTCTTCAAAACGTGCGC--GTGAGATG 5453731 Query 517843 GA--CATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAA 517900 || || || ||||| |||||| ||| || || | |||||| || | || || | Sbjct 5453732 GAAACAGAGTAGTCAATACCTTCGTACAGCGAGTCGATTTCAATGGTCGCCTGCGTGCTA 5453791 Query 517901 GAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAA-----GGCTT 517955 || || | || || || ||||| || |||| || | || | |||| Sbjct 5453792 CTGGAAAGGGTGCGCTTCGCGCGTTCGCACTGAGTCCGGAGACGACGCAGAGCACGGCTG 5453851 Query 517956 TT---GCTGAT-TGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCAT 518011 || |||||| | ||| |||||| | |||||||||| || | ||||| | Sbjct 5453852 TTCGAGCTGATGTCCTTCCC-TCTGTTCT-----TTCTCTTGAAGTCCTGCACACAGAAG 5453905 Query 518012 GTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTT 518071 || || ||||| || || || || ||||| || | || | |||| ||| || | Sbjct 5453906 TCCACCAGGCGATTGTCGAAGTCCTCGCCTCCTAAATGCGTGTCGCCTGCCGTTGCCCGC 5453965 Query 518072 ACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATA 518131 || | ||||| || ||||||| | ||| |||| || ||| ||| |||||||||||| Sbjct 5453966 ACCTCGAAAATGCCGTCTTCAATCGTCAAGAGAGAGACGTCAAAGGTGCCACCACCCATA 5454025 Query 518132 TCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCA 518191 || ||||| | ||| |||| ||| | || || ||||||||||||| ||| Sbjct 5454026 TCGAAAATCAACACAATCATCTCTCCACACCCGCGCTTGTCCAGACCATACGCAATTGCA 5454085 Query 518192 GCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCT 518251 || |||||||| || || ||||||| | || || | ||| ||||| | || |||||| Sbjct 5454086 GCTGCAGTTGGCTCGTTGATAATTCGAAGTACGTTCAAACCTGCAATCGTGCCAGCATCT 5454145 Query 518252 TTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTT 518311 || |||||||| | || ||||| || ||||| || || || || ||||| || || | Sbjct 5454146 TTTGTGGCTTGGCGCTGAGAATCATTGAAATACGCGGGCACCGTGATAACCGCTTCTTTC 5454205 Query 518312 ACTTCTTTACCAATATAAGCGCTTGCCG---TTTGTTTCATTTTACTTAAAATCATTGAT 518368 ||| ||||| |||| | ||| ||| |||||| || | | | ||| | Sbjct 5454206 ACTGGGCGACCAAGGTAAG---ATTCCGAAATTTCTTTCATCTTGCCCAGCACCATCGCA 5454262 Query 518369 GAAATTTGTTCTGG--GGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATG 518426 ||||| | || || |||| | || | || ||| || ||||| | || Sbjct 5454263 GAAATCTCCTCAGGGTGGAAACAT--TTCGTCTCTCCTTGGTAATGCACTTCGATTAGTG 5454320 Query 518427 GTTTATTACC---AACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACAC 518483 | || ||| || || ||||| || ||||||| |||||| || ||||| || Sbjct 5454321 GCTTGCCACCTTTGCCAGCGATGACTTTGAACGGCCAGTGTTTCATGTCAGATTGCACCG 5454380 Query 518484 TTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGAT 518543 |||||| || | | ||||| | ||||||||||| ||||| ||||| || | Sbjct 5454381 AGGGGTCATCGAACTTGCGGCCAATCAGGCGTTTTGCATCGAAAATCGTATTCTCCGGGT 5454440 Query 518544 TAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAA 518603 | || |||| | ||| || ||||| |||| || |||| || || ||||| | | Sbjct 5454441 TGCGCGCCACTTGGTTTTTCGCGGCATCCCCAACAAGTCGTTCCGTGTCGGTAAACGCCA 5454500 Query 518604 CATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTT 518663 | || || || || ||||| || || ||||| |||||||| ||||| || | |||||| Sbjct 5454501 CGTACGACGGCGTAGTGCGGTTGCCCTGATCGTTCGCAATGATTTCCACCGTGTCATTTT 5454560 Query 518664 GCCATACACCTACACA 518679 ||| ||||| || || Sbjct 5454561 TCCACACACCAACGCA 5454576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780779178110926