Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1 370 1e-97 >seq1 Length=11360811 Score = 370 bits (410), Expect = 1e-97 Identities = 1077/1645 (65%), Gaps = 26/1645 (2%) Strand=Plus/Plus Query 6511 CATTTGATAACAGTAGTTTTCGAGACCATTCTTCGCCTCGACCTTTTTCGC--GTACTTT 6568 ||| || || || ||||| || | || ||| |||||||| || | | ||| || | | Sbjct 5452972 CATGTGGTAGCAATAGTTCTCCAAACTATTTTTCGCCTCAAC--TCTACGCATGTTCGCT 5453029 Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||||||| |||| ||||| || || || || ||||| | || || || | Sbjct 5453030 TCATCTTCAGCTTTGTACTTCTCTGCTTCCTGCACCATGCGGTTGATCTCGTCCTGGCTG 5453089 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | || || || || ||||| ||||| |||| | ||| || | || || || || Sbjct 5453090 AGTCGTCCTTTCTCGTTCGTGATCGTGATCTGGCTGCTTTTCCCGGTGGATTTGTCCTCG 5453149 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 || | || ||| ||| || ||||| || | || ||| | || | ||| || || Sbjct 5453150 GCTGTCACGCTCATAATGCCGTTTGCGTCCAAGTCAAACGTAACTTCAATCTGCGGAACT 5453209 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 |||| || |||| || || || | | ||| |||| | | | |||| || || Sbjct 5453210 CCCCGGGGGGCGGGAGGGATGCCATCCAGGTGGAATTTACCCAAAAGATTGTTGTCTTTC 5453269 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | | |||||||||||| |||| | ||| |||| | || |||||||| | Sbjct 5453270 GTCAGTGGACGTTCACCTTCGAAGACCTGAATGAGCACCCCGGGCTGATTATCAGAGTAC 5453329 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || | |||||||| ||||| | || ||||||||||| | ||||||| | ||| Sbjct 5453330 GTCGTAAAGATTTGCGACTTCTTTGTAGGGATCGTCGTATTCCGAGGAATAAGTGTAGTC 5453389 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988 || | ||||| |||||| ||||| || || || || | ||| || | ||| | || Sbjct 5453390 ATGACGCCACCGGCAGTTTCTAGTCCGAGGGAAAGTGGCGCCACATCGAGGAGGAGCAAC 5453449 Query 6989 TCTTGAAC---AGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 | || || ||| | | | |||| | | || |||||||| || | || || Sbjct 5453450 TGCTGTACTTGAGAGCTGGTGAC---ACCCTTGATAATAGCGGCTTGCACTGCAGCGCCA 5453506 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || ||||| || ||||||||||| || | ||||||||||||| || ||| | Sbjct 5453507 TACGCGACGGCTTCATCGGGGTTGATGGACCGGCAGGGTTCTTTACCGTTGAAG-AATTC 5453565 Query 7106 GATAAC-ATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATT 7164 | ||| | ||| || |||||||| |||| || || || ||||||| || | ||| | Sbjct 5453566 GGTAATGAATTGCTGGATTTTCGGAATTCTCGTGGACCCCCCGACCAGTACAACTTCGCT 5453625 Query 7165 CACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTT 7224 ||| || || | | |||| | || ||||| || |||| | | Sbjct 5453626 TACTGAGCGCTTGTCAGTACCAGCGTCTTTCAACACCTTCTCGACCGGGTCCAGCGAGTG 5453685 Query 7225 ACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATC 7284 |||||| ||||||| || ||||| ||||||||||| || | ||||| | || | || Sbjct 5453686 ACGGAAGTAGTCCATGCAAAGTTCTTCAAAACGTGCGCGTGAGATGGAAACAGAGTAGTC 5453745 Query 7285 AACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCG 7344 || || ||||| | ||| || ||||||||||| | || | | || | || || Sbjct 5453746 AATACCTTCGTACAGCGAGTCGATTTCAATGGTCGCCTGCGTGCTACTGGAAAGGGTGCG 5453805 Query 7345 CTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATC 7404 ||| ||||| || ||| || || | |||||| || ||||| ||| | || || Sbjct 5453806 CTTCGCGCGTTCGCACTGAGTCCGGAGACGACGCAGAGCACGGCTGTTCGAGCTGATGTC 5453865 Query 7405 TTTCT-TATGTT--TACGTTTAAACTCTT---CAGAGAAGTGTCGAAGGAGTCTCGAATC 7458 ||| | |||| | | || || || | || |||||| ||| | | || Sbjct 5453866 CTTCCCTCTGTTCTTTCTCTTGAAGTCCTGCACACAGAAGTCCACCAGGCGATTG---TC 5453922 Query 7459 GAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCC 7518 ||| || || || || || || || || || || || || || || || || || | Sbjct 5453923 GAAGTCCTCGCCTCCTAAATGCGTGTCGCCTGCCGTTGCCCGCACCTCGAAAATGCCGTC 5453982 Query 7519 TTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578 |||||| | || | || || ||||| || |||||||||| || ||||| | || | Sbjct 5453983 TTCAATCGTCAAGAGAGAGACGTCAAAGGTGCCACCACCCATATCGAAAATCAACACAAT 5454042 Query 7579 CGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATT 7638 | | || | | ||| || ||||| ||||| || || || || ||||| || || Sbjct 5454043 CATCTCTCCACACCCGCGCTTGTCCAGACCATACGCAATTGCAGCTGCAGTTGGCTCGTT 5454102 Query 7639 AATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTG 7698 ||||| ||||| ||||| || ||||| || | |||||||| || ||||| || || Sbjct 5454103 GATAATTCGAAGTACGTTCAAACCTGCAATCGTGCCAGCATCTTTTGTGGCTTGGCGCTG 5454162 Query 7699 CGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATA 7758 ||||| || || || || || ||||| | ||||| || | ||| ||| || || Sbjct 5454163 AGAATCATTGAAATACGCGGGCACCGTGATAACCGCTTCTTTCACTGGGCGACCAAGGTA 5454222 Query 7759 CGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCC-GCAA 7817 ||||||| || |||||||| ||| || ||||||| |||||||| |||| | || Sbjct 5454223 AGATTCCGAAATTTCTTTCATCTTGCCCAGCACCATCGCAGAAATCTCCTCAGGGTGGAA 5454282 Query 7818 ACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGA 7877 || |||||| || || | ||| ||||| || | || || | | || | || Sbjct 5454283 ACA-TTTCGTCTCTCCTTGGTAATGCACTTCGATTAGTGGCTTGCCACCTTTGCCAGCGA 5454341 Query 7878 TAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTC 7937 | || || ||| ||| | |||||| || ||| ||| |||| ||||| | | Sbjct 5454342 TGACTTTGAACGGCCAGTGTTTCATGTCAGATTGCACCGAGGGGTCATCGAACTTGCGGC 5454401 Query 7938 CGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCG 7997 | || || || |||||||| |||| || || | ||||| || |||||| |||| Sbjct 5454402 CAATCAGGCGTTTTGCATCGAAAATCGTATTCTCCGGGTTGCGCGCCACTTGGTTTTTCG 5454461 Query 7998 CCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTC 8057 | || ||||| | ||| ||||| | | | |||||||| |||||||| || || || | Sbjct 5454462 CGGCATCCCCAACAAGTCGTTCCGTGT---CGGTAAACGCCACGTACGACGGCGTAGTGC 5454518 Query 8058 GATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACG 8117 | || || || ||||||||||| ||||| || ||| |||| ||| || || ||||||| Sbjct 5454519 GGTTGCCCTGATCGTTCGCAATGATTTCCACCGTGTCATTTTTCCACACACCAACGCACG 5454578 Query 8118 AATACGTTGTTCCTAAATCAATACC 8142 | ||||| || || | ||||| || Sbjct 5454579 AGTACGTGGTCCCCAGGTCAATCCC 5454603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635125884991640