Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq12 134 2e-26 >seq12 Length=3345923 Score = 134 bits (148), Expect = 2e-26 Identities = 241/348 (69%), Gaps = 8/348 (2%) Strand=Plus/Plus Query 106280 TCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCA 106339 || ||||||||||||||||||| || || || | ||| | || ||| | | ||||| Sbjct 1181439 TCTGCGAGACCTTGAACACCCAGCCCGATCGGACGGTGCCTCAGGTTACTCCTGCGCGCT 1181498 Query 106340 GTCTCAACG---GGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATC 106396 ||| | || || | || ||||| || || || || ||||| || | | | Sbjct 1181499 ---TCAGGGATAGGGTAGTAGTTCCTGTCGATCACGCGATTCAGATTGCGTGTCGCGA-C 1181554 Query 106397 TTTGTGATTT-CATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTT 106455 |||| | | | ||||| || |||| ||||| || || || |||||||| Sbjct 1181555 TTTGACAACAGCTTTTAGTTTGTCGTAATTGAAAGTCTTCGTTTCCCGATCAACATACTT 1181614 Query 106456 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 106515 ||||||| | || ||||| ||||| |||||| |||||||| | |||||| | Sbjct 1181615 CGGAAGGGACAGAGACGCCAAGTTGCAGACAGCCACTTCATCCTTGCTGGCGTACTCAAC 1181674 Query 106516 AATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTT 106575 |||||||||||| || ||| || || || || || | ||||| ||||| |||||| | Sbjct 1181675 AATTTCTGTACATAAATTGCTACCTTTGATGGTGCCAAGGTTCTTCTGGTTGCTCTTTCT 1181734 Query 106576 GTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 106623 ||||| || |||||||| | |||||| |||||||| ||||| |||| Sbjct 1181735 ATTGCAGGCGTCCTTGTACATCATGTACGGCGTCCCTGTCTCGATCTG 1181782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589974376584040