Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq7 156 9e-33 seq1 134 3e-26 >seq7 Length=4216856 Score = 156 bits (172), Expect = 9e-33 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCC 194984 |||||| || | |||||||| ||||| || ||||| ||||| || | || ||||| || Sbjct 3942887 TCTCAACACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGATAGTGTTCTGCC 3942828 Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044 |||||| ||||| || ||||| ||||| || | |||||||| ||||| ||||||||||| Sbjct 3942827 ATCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGTTGGTCAGGAGGGATGCCTTCTTT 3942768 Query 195045 GTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAAC 195104 ||||||||||| ||| || ||||| || || || || || ||||| || || | Sbjct 3942767 ATCTTGAATTTTAGCCTTCACATTCTCGATCGTATCAGACGGCTCTACTTCTAGTGTGAT 3942708 Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||||||| | ||||| || || | |||||| Sbjct 3942707 GGTTTTTCCTGTAAGGGTTTTCACAAAAATTTGCAT 3942672 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| || || | |||||| || || || || ||||| ||||| || | | ||||| Sbjct 3942661 AGTCGTAACACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGATAATGTTCTT 3942602 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||| || || ||||| || |||||||| | || || || || || ||||| |||||| Sbjct 3942601 CCATCATCCAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGTGGAATCCCTTCT 3942542 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 |||||||| ||||| ||| |||||||| | || ||||| ||||| || || ||| Sbjct 3942541 TTGTCTTGTATTTTCGTCTTCACGTTCTCTACCGTATCCGACGGCTCCACCTCTAGCGTA 3942482 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | |||||| || || | ||||| ||||| | |||||| Sbjct 3942481 ATCGTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCATT 3942443 Score = 127 bits (140), Expect = 5e-24 Identities = 109/135 (81%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || || ||||| ||||| |||||||||| | ||||| || || || || || Sbjct 3942419 GTGAAGTGTTGATTCTTTCTGAATGTTGTAATCGGACAACGTTCTTCCGTCCTCCAGTTG 3942360 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| ||||| || ||||| |||||||||||||| ||||| ||||| ||||| |||||||| Sbjct 3942359 CTTTCCTGCAAAAATAAGACGTTGTTGGTCTGGCGGAATACCTTCCTTGTCCTGAATTTT 3942300 Query 195057 TTGCTTGACGTTCTC 195071 | || |||||||| Sbjct 3942299 TGCTTTCACGTTCTC 3942285 >seq1 Length=11360811 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || ||||| ||||| || || || || ||||| |||| |||||||| || ||||| Sbjct 4842085 ACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCTGCCGTCTTCC 4842144 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || |||||||| || | || ||||| || || || || || ||||||||| Sbjct 4842145 AGTTGTTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTGA 4842204 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| ||| || || ||||| ||||| ||| || ||||| ||||| | ||||| Sbjct 4842205 ATCTTTGCCTTCACATTTTCAATAGTGTCGGAAGCCTCAACTTCCAGGGTGATGGTCTTC 4842264 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | || || ||||| | ||||| Sbjct 4842265 CCTGTGAGGGTCTTGACGAAAATCTGCAT 4842293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109469218532057