Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 2e-15 seq7 93.3 3e-14 >seq1 Length=11360811 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 34779 TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGT 34838 |||| ||| ||| ||||| ||||| ||||| || || ||| | || ||||| ||| Sbjct 4842091 TGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCTGCCGTCTTCCAGTTGT 4842150 Query 34839 TTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTC 34898 || ||||| || || || | |||||||| | || | |||||||||||| |||||| Sbjct 4842151 TTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTGAATCTTT 4842210 Query 34899 TGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTG 34958 || || | | || | || |||||||| || | ||| ||||| || || ||| Sbjct 4842211 GCCTTCACATTTTCAATAGTGTCGGAAGCCTCAACTTCCAGGGTGATGGTCTTCCCTGTG 4842270 Query 34959 AGAGTCTTCACAAAGATCTGCAT 34981 || ||||| || || |||||||| Sbjct 4842271 AGGGTCTTGACGAAAATCTGCAT 4842293 >seq7 Length=4216856 Score = 93.3 bits (102), Expect = 3e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | ||| | | |||||||||| ||| ||||||||||||||| || || | Sbjct 3942444 TTCCTCCACGCAATCGAAGTACCAAGTGAAGTGTTGATTCTTTCTGAATGTTGTAATCGG 3942385 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | | ||| | | || ||||| || ||||| ||||| || || ||||| |||||| ||| Sbjct 3942384 ACAACGTTCTTCCGTCCTCCAGTTGCTTTCCTGCAAAAATAAGACGTTGTTGGTCTGGCG 3942325 Query 34873 GCACCCCCTCCTTGTC 34888 | | || |||||||| Sbjct 3942324 GAATACCTTCCTTGTC 3942309 Score = 89.7 bits (98), Expect = 3e-13 Identities = 153/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 34764 AACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGT 34823 || ||||| ||||| |||| || || ||||||||||| |||||||| || ||| Sbjct 3942889 AATCTCAACACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGATAGTGTTCTG 3942830 Query 34824 TCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCC 34883 |||| ||||||||||| || ||||| || || | || ||||| | || | || || Sbjct 3942829 CCATCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGTTGGTCAGGAGGGATGCCTTCT 3942770 Query 34884 TTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGG 34941 || || ||| || || || || || |||| ||| | ||| || || | | Sbjct 3942769 TTATCTTGAATTTTAGCCTTCAC--ATTCTCGATCGTATCAGACGGCTCTACTTCTAGTG 3942712 Query 34942 TTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||||||||||| || || || |||||||| || ||||| Sbjct 3942711 TGATGGTTTTTCCTGTAAGGGTTTTCACAAAAATTTGCAT 3942672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324630153912888