Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1 122 7e-22 seq7 114 1e-19 seq18 93.3 3e-13 >seq1 Length=11360811 Score = 122 bits (134), Expect = 7e-22 Identities = 362/553 (65%), Gaps = 13/553 (2%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||| | || || || | || ||||| || || |||||||| ||| |||||| | Sbjct 5454609 GCTGTGGGGATTGACCTGGGGACCACGTACTCGTGCGTTGGTGTGTGGAAAAATGACACG 5454550 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || ||||| ||||| || ||||| || ||| | ||||| || || || || | || || Sbjct 5454549 GTGGAAATCATTGCGAACGATCAGGGCAACCGCACTACGCCGTCGTACGTGGCGTTTACC 5454490 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || |||| | ||||| ||||| || ||| | |||| | | || || ||| Sbjct 5454489 GACACGGAACGACTTGTTGGGGATGCCGCGAAAAACCAAGTGGCGCGCAACCCGGAGAAT 5454430 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || ||||| ||||| ||||| | ||||| | | || |||| | | || || | Sbjct 5454429 ACGATTTTCGATGCAAAACGCCTGATTGGCCGCAAGTTCGATGACCCCTCGGTGCAATCT 5454370 Query 550232 GATATGAAGCATTGGCCTTTCCAAAT------TGTTAATGTTTCTGGAAAACCTTATATT 550285 || ||||| || ||||| ||| || | || || | | || || || || Sbjct 5454369 GACATGAAACACTGGCCGTTCAAAGTCATCGCTGGCAAAGGT---GGCAAGCCACTAATC 5454313 Query 550286 GAAGCTACTCATGAAGGATCTGTTAAACAATTTTCACCA-GAACAAATTTCATCTATGGT 550344 |||| | | ||||| ||| ||| |||| || | ||||| | ||||| Sbjct 5454312 GAAGTGCATTACCAAGGAGAGACGAAATG-TTTCCACCCTGAGGAGATTTCTGCGATGGT 5454254 Query 550345 TTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGT 550404 | || |||||| ||| | ||| |||||| ||| | || || || Sbjct 5454253 GCTGGGCAAGATGAAAGAAATTTCGGAATCTTACCTTGGTCGCCCAGTGAAAGAAGCGGT 5454194 Query 550405 AATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGG-AC 550463 || || || || || ||||| ||||| || || || ||||| || ||||||||||| || Sbjct 5454193 TATCACGGTGCCCGCGTATTTCAATGATTCTCAGCGCCAAGCCACAAAAGATGCTGGCAC 5454134 Query 550464 GTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCAT 550523 | ||||| || | || || ||||| |||||||| || || ||||| |||||| |||| | Sbjct 5454133 G-ATTGCAGGTTTGAACGTACTTCGAATTATCAACGAGCCAACTGCAGCTGCAATTGCGT 5454075 Query 550524 ATGGACTTGATAA 550536 |||| || || || Sbjct 5454074 ATGGTCTGGACAA 5454062 Score = 86.0 bits (94), Expect = 5e-11 Identities = 191/287 (67%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 552303 GATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATC 552362 ||||| | || || || || || ||||||| | || || | ||||||| ||||| Sbjct 5453436 GATGTGGCGCCACTTTCCCTCGGACTAGAAACTGCCGGTGGCGTCATGACTACACTTATT 5453377 Query 552363 GATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAAT 552422 | | ||||| || || ||| || || || | | ||| | ||||| || |||||| Sbjct 5453376 CCTCGGAATACGACGATCCCTACAAAGAAGTCGCAAATCTTTACGACGTACTCTGATAAT 5453317 Query 552423 CAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAAT 552482 || | | || ||||| | || ||||| ||| | | | || ||||| || ||| Sbjct 5453316 CAGCCCGGGGTGCTCATTCAGGTCTTCGAAGGTGAACGTCCACTGACGAAAGACAACAAT 5453257 Query 552483 CAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATT 552542 | | |||| || | | || || || ||||| || || || ||||| ||||| ||| Sbjct 5453256 CTTTTGGGTAAATTCCACCTGGATGGCATCCCTCCCGCCCCCCGGGGAGTTCCGCAGATT 5453197 Query 552543 GAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589 |||||||| || || | || || || || ||| ||| ||||| || Sbjct 5453196 GAAGTTACGTTTGACTTGGACGCAAACGGCATTATGAGCGTGACAGC 5453150 >seq7 Length=4216856 Score = 114 bits (126), Expect = 1e-19 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 563271 ATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTG 563330 |||||| ||| || || ||| ||||| || | ||| ||||| |||||| || || Sbjct 3942875 ATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGATAGTGTTCTGCCATCTTCCAGCTG 3942816 Query 563331 TTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTT 563390 ||| || ||||| || || || || || |||||||| || |||||||||||||||||||| Sbjct 3942815 TTTCCCTGCAAAGATCAGCCTCTGTTGGTCAGGAGGGATGCCTTCTTTATCTTGAATTTT 3942756 Query 563391 TTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAG 563449 || || ||| || ||||||| | ||| ||| || || | ||||| || | Sbjct 3942755 AGCCTTCACATTCTCGATCGTATCAGACGGCTCTAC-TTCTAGTGTGATGGTTTTTCCTG 3942697 Query 563450 TAAGAGTTTTAACGAAAATTTGCAT 563474 |||| ||||| || ||||||||||| Sbjct 3942696 TAAGGGTTTTCACAAAAATTTGCAT 3942672 Score = 96.9 bits (106), Expect = 3e-14 Identities = 149/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 563267 CAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAA 563326 |||| |||||||| ||| || ||| ||||| |||| || |||||| ||| || | Sbjct 3942650 CAAG-TGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGATAATGTTCTTCCATCATCCA 3942592 Query 563327 GTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAA 563386 |||| ||||| || || || | | ||||||||||| ||||| |||||||| ||||| | Sbjct 3942591 GTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGTGGAATCCCTTCTTTGTCTTGTA 3942532 Query 563387 TTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTA 563445 |||| || || ||| | ||||| | | | || || || |||| || || Sbjct 3942531 TTTTCGTCTTCACGTTCTCTACCGTATCCG-ACGGCTCCACCTCTAGCGTAATCGTCTTG 3942473 Query 563446 CCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||||| || ||||| |||||||| ||||| Sbjct 3942472 CCAGTTAGGGTTTTCACGAAAATCTGCAT 3942444 Score = 86.0 bits (94), Expect = 5e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 563260 CGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAA 563319 || ||||| | ||||| || |||||| ||| |||||||| | | |||||| Sbjct 3942430 CGAAGTACCAAGTGAAGTGTTGATTCTTTCTGAATGTTGTAATCGGACAACGTTCTTCCG 3942371 Query 563320 TCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTA 563379 || || ||||| ||||| ||||||||||| | ||| || || || ||||| ||||| || Sbjct 3942370 TCCTCCAGTTGCTTTCCTGCAAAAATAAGACGTTGTTGGTCTGGCGGAATACCTTCCTTG 3942311 Query 563380 TCTTGAATTTTTTGTTTTAC 563399 || ||||||||| ||| || Sbjct 3942310 TCCTGAATTTTTGCTTTCAC 3942291 >seq18 Length=2561326 Score = 93.3 bits (102), Expect = 3e-13 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 552495 TTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTC 552554 ||| |||||| ||| |||||||||||||||||||| || ||||| || ||||| || ||| Sbjct 812277 TTTGATTTAGTAGGAATTCCTCCTGCTCCTCGTGGCGTTCCGCAGATCGAAGTGACCTTC 812336 Query 552555 GATATCGATGCCAATGGAATTTTGAA 552580 ||| |||||||||| || || |||| Sbjct 812337 GATGTCGATGCCAACGGCATCATGAA 812362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029249937591790