Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq7 149 5e-31 seq18 84.2 2e-11 >seq7 Length=4216856 Score = 149 bits (164), Expect = 5e-31 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 ||||| || || |||||||| ||||| || || || ||||| || | | ||||| || Sbjct 3942658 CGTAACACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGATAATGTTCTTCCA 3942599 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || |||| |||||| || || || ||||||||||| ||||| || ||||| |||||||| Sbjct 3942598 TCATCCAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGTGGAATCCCTTCTTTG 3942539 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 ||||| ||||| || || | ||||| || || |||| ||||| || || || | | Sbjct 3942538 TCTTGTATTTTCGTCTTCACGTTCTCTACCGTATCCGACGGCTCCACCTCTAGCGTAATC 3942479 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| |||| ||||| || || |||||||| Sbjct 3942478 GTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCAT 3942444 Score = 147 bits (162), Expect = 2e-30 Identities = 171/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||| ||| | || || |||||||| ||||| || || || || ||||| || || Sbjct 3942898 CCACCTCGTAATCTCAACACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTC--CG 3942841 Query 101303 ATAGT--TCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 ||||| |||| |||| |||| || || |||||||| |||| | |||||| || || | Sbjct 3942840 ATAGTGTTCTGCCATCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGTTGGTCAGGAG 3942781 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | ||||||||||||||||||||||| || ||| | || | || ||||||| || | Sbjct 3942780 GGATGCCTTCTTTATCTTGAATTTTAGCCTTCACATTCTCGATCGTATCAGACGGCTCTA 3942721 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| || |||| ||||| || || | ||||| ||||| || ||||| Sbjct 3942720 CTTCTAGTGTGATGGTTTTTCCTGTAAGGGTTTTCACAAAAATTTGCAT 3942672 >seq18 Length=2561326 Score = 84.2 bits (92), Expect = 2e-11 Identities = 194/287 (68%), Gaps = 4/287 (1%) Strand=Plus/Minus Query 13648 TATATTGAATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGG 13707 || |||||| || | || ||||| | | ||||| | | | || ||||| || || Sbjct 1981971 TACATTGAACTTCCTTTGGCAACCAGCGTAGTTCATATACCTAACCTTCCCATATATGGG 1981912 Query 13708 TCGCTCCATCCAGGCACGATCGTG-AGTTCCGCATATTGACCACATGCAACCGGCATAAC 13766 || ||| | | | | ||||| || |||| || ||||||||||| ||| | |||| Sbjct 1981911 TCTCTCTCTGAAAGGCTGGTCGTGCAGAGCCGCG-ATCGACCACATGCATCCGACGTAAC 1981853 Query 13767 CGTTGGGATCGCGT-CCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGATTAAA 13825 |||||||||| ||| || |||| |||||||| || || |||| ||| || | Sbjct 1981852 CGTTGGGATC-CGTCCCGTCCAGGCTGTATTTATCATTCAAATGTATAGCTCCCGCAAGT 1981794 Query 13826 GCCACTGTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATATAT 13885 ||| | | |||||| | ||| || | || || || ||||| || || | || ||| Sbjct 1981793 GCCTCAGCAGGCGATTTCATCCACTCCAGCATCTTCTTCGCCCAGTACATACGCAGATAG 1981734 Query 13886 CCGTGCATTTTGCCTTGCGTTTTAAGCTGTGTCTGAGCAGCGTTCCA 13932 |||||||| || |||| | | | ||||| ||| || || ||||| Sbjct 1981733 CCGTGCATCTTTCCTTCCCTCATTAGCTGCTGCTGCGCTGCATTCCA 1981687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396274193380947