Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq7 93.3 3e-14 seq1 87.8 1e-12 >seq7 Length=4216856 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || || |||||||| || || || || || ||||| ||||| |||||| Sbjct 3942670 CCGCCACGCAGTCGTAACACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGAT 3942611 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | ||| | || |||| ||||| || || || |||| ||||| ||||| | ||| Sbjct 3942610 AATGTTCTTCCATCATCCAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGTGGA 3942551 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCC-ACAGACTCTGACGCCTCCAC 48718 | || || ||||| || ||| || || | | | || | || |||| |||||| Sbjct 3942550 ATCCCTTCTTTGTCTTGTAT-TTTCGTCTTCACGTTCTCTACCGTATCCGACGGCTCCAC 3942492 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | ||||||||| || || || | ||||| || ||||||||||| Sbjct 3942491 CTCTAGCGTAATCGTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCAT 3942444 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||||||||| || || ||| || ||||| ||||| || ||||| ||| | || Sbjct 3942884 CAACACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGATAGTGTTCTGCCATC 3942825 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| ||| || || ||||| ||||| | |||||| || | || | ||| || || || Sbjct 3942824 TTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGTTGGTCAGGAGGGATGCCTTCTTTATC 3942765 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||| || || ||| | | | || |||| ||| || || | || || || Sbjct 3942764 TTGAATTTTAGCCTTCACATTCTCGATCGTATCAGACGGCTCTACTTCTAGTGTGATGGT 3942705 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||||| || | ||||| |||||||| |||||| Sbjct 3942704 TTTTCCTGTAAGGGTTTTCACAAAAATTTGCATC 3942671 >seq1 Length=11360811 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| || || || || ||||| || || ||| ||| |||| |||| || Sbjct 4842090 ATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCTGCCGTCTTCCAGTTG 4842149 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 || ||||| || || || | ||| || || | ||| | ||||||||||| |||||| Sbjct 4842150 TTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTGAATCTT 4842209 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 | || ||| | | || || || ||||| || |||| || || || || || || Sbjct 4842210 TGCCTTCACATTTTCAATAGTGTCGGAAGCCTCAACTTCCAGGGTGATGGTCTTCCCTGT 4842269 Query 48743 CAAAGTTTTTACAAAAATCTGCATCGTGTGTAC 48775 | || || || ||||||||||||||| |||| Sbjct 4842270 GAGGGTCTTGACGAAAATCTGCATCGTGGGTAC 4842302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380933556228333