Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1 196 3e-44 seq7 100 2e-15 >seq1 Length=11360811 Score = 196 bits (216), Expect = 3e-44 Identities = 374/546 (68%), Gaps = 9/546 (2%) Strand=Plus/Minus Query 474335 GGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAA 474394 || ||||| | || || || ||| || || | ||| ||| |||||| | || ||| Sbjct 5454603 GGGATTGACCTGGGGACCACGTACTCGTGCGTTGGTGTGTGGAAAAATGACACGGTGGAA 5454544 Query 474395 ATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACT 474454 || ||||| || || || || || | || || || || || || | ||||| || || Sbjct 5454543 ATCATTGCGAACGATCAGGGCAACCGCACTACGCCGTCGTACGTGGCGTTTACCGACACG 5454484 Query 474455 GAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATT 474514 |||| ||| |||| ||||| || ||| | |||| || || || | ||||| ||| Sbjct 5454483 GAACGACTTGTTGGGGATGCCGCGAAAAACCAAGTGGCGCGCAACCCGGAGAATACGATT 5454424 Query 474515 TTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATG 474574 || ||||| ||| | ||||||| || || || ||||| || | || |||||||| ||| Sbjct 5454423 TTCGATGCAAAACGCCTGATTGGCCGCAAGTTCGATGACCCCTCGGTGCAATCTGACATG 5454364 Query 474575 CGTCATTGGCCTTTTAAGGTGATAAATGTT---GGTGGTAAACCATATATAGAAG--CAA 474629 || ||||| || || || || || ||||| || ||| || |||| || Sbjct 5454363 AAACACTGGCCGTTCAAAGTCATCGCTGGCAAAGGTGGCAAGCCACTAATCGAAGTGCAT 5454304 Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCG-GAACAAATTTCTTCAATGGTTTTAGCC 474688 ||| ||| || || ||| ||| |||| || | |||||| | ||||| | | | Sbjct 5454303 TACCA--AGGAGAGACGAAATG-TTTCCACCCTGAGGAGATTTCTGCGATGGTGCTGGGC 5454247 Query 474689 AAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748 || |||||| ||| || || || ||||| | ||| | || || || || || Sbjct 5454246 AAGATGAAAGAAATTTCGGAATCTTACCTTGGTCGCCCAGTGAAAGAAGCGGTTATCACG 5454187 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || || || ||||| ||||||||||| || ||||| || |||||||| || | |||||| Sbjct 5454186 GTGCCCGCGTATTTCAATGATTCTCAGCGCCAAGCCACAAAAGATGCTGGCACGATTGCA 5454127 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 ||| | || || | || ||||| || || ||||| ||||| ||| |||| |||||||| Sbjct 5454126 GGTTTGAACGTACTTCGAATTATCAACGAGCCAACTGCAGCTGCAATTGCGTATGGTCTG 5454067 Query 474869 GATAAG 474874 || ||| Sbjct 5454066 GACAAG 5454061 Score = 95.1 bits (104), Expect = 8e-14 Identities = 250/373 (67%), Gaps = 14/373 (4%) Strand=Plus/Minus Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCA--GGTC 475850 || || |||||||| || || ||||| ||||| || ||||| |||||| |||| ||| Sbjct 5453529 AACCCCGATGAAGCCGTCGCGTATGGCGCTGCAGTGCAAGCCGCTATT--ATCAAGGGTG 5453472 Query 475851 A-ATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGT 475909 | ||| | || || | | | | || | || || | |||||||| | || Sbjct 5453471 TCACCAG-CTCTCAAGTACAGCAGTTGCTCCTCCTCGATGTGGCGCCACTTTCCCTCGGA 5453413 Query 475910 CTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGC 475969 || ||||| | || || | ||||||| |||||| | ||||| | ||||| | | Sbjct 5453412 CTAGAAACTGCCGGTGGCGTCATGACTACACTTATTCCTCGGAATACGACGATCCC-TAC 5453354 Query 475970 AAAAAA-TCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAAT 476028 ||| || || || | ||| | || || ||||||||||| | || ||| || | Sbjct 5453353 AAAGAAGTCGCAAATCTTTACGACGTACTCTGATAATCAGCCCGGGGTGCTCATTCAGGT 5453294 Query 476029 CTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTT---GGAACTTTTAATCT 476085 ||| ||||||||| | | | || ||||| || ||| ||| || | || | || Sbjct 5453293 CTTCGAAGGTGAACGTCCACTGACGAAAGACAA---CAATCTTTTGGGTAAATTCCACCT 5453237 Query 476086 TGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGA 476145 || || || ||||| || ||| | |||||||| || ||||||||||| ||||| | || Sbjct 5453236 GGATGGCATCCCTCCCGCCCCCCGGGGAGTTCCGCAGATTGAAGTTACGTTTGACTTGGA 5453177 Query 476146 TGCAAATGGTATT 476158 ||||| || ||| Sbjct 5453176 CGCAAACGGCATT 5453164 Score = 93.3 bits (102), Expect = 3e-13 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 480563 TACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTC 480622 ||| |||||||| || ||| || | || || || | ||||||||| ||||| Sbjct 4842084 TACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCTGCCGTCTTC 4842143 Query 480623 AAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTG 480682 ||||| || || || || || || | || || || || || || || ||||||||||| Sbjct 4842144 CAGTTGTTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTG 4842203 Query 480683 AATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTT 480741 ||||||| || ||| ||||||||| || | | | || ||| ||||| || || | Sbjct 4842204 AATCTTTGCCTTCACATTTTCAATAGTGTCGGAAGCCTCAA-CTTCCAGGGTGATGGTCT 4842262 Query 480742 TACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || ||||| ||||| |||||||| || Sbjct 4842263 TCCCTGTGAGGGTCTTGACGAAAATCTG 4842290 >seq7 Length=4216856 Score = 100 bits (110), Expect = 2e-15 Identities = 105/137 (77%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 480558 CGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTA 480617 || ||||| | |||||||| |||||| || || ||||| | | ||||| Sbjct 3942430 CGAAGTACCAAGTGAAGTGTTGATTCTTTCTGAATGTTGTAATCGGACAACGTTCTTCCG 3942371 Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || ||||||||||| |||||||||||||||||||| || || ||||| ||||||||| Sbjct 3942370 TCCTCCAGTTGCTTTCCTGCAAAAATAAGACGTTGTTGGTCTGGCGGAATACCTTCCTTG 3942311 Query 480678 TCTTGAATCTTTTGTTT 480694 || ||||| ||||| || Sbjct 3942310 TCCTGAAT-TTTTGCTT 3942295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268141838583908