Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq1 354 1e-92 seq7 176 6e-39 seq12 89.7 7e-13 >seq1 Length=11360811 Score = 354 bits (392), Expect = 1e-92 Identities = 1039/1586 (66%), Gaps = 15/1586 (1%) Strand=Plus/Minus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 ||| | || || || | || || || ||||| || |||||||| ||| ||||||| Sbjct 5454609 GCTGTGGGGATTGACCTGGGGACCACGTACTCGTGCGTTGGTGTGTGGAAAAATGACACG 5454550 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || || || || |||| || || || ||||| || || || |||||||| || ||||| Sbjct 5454549 GTGGAAATCATTGCGAACGATCAGGGCAACCGCACTACGCCGTCGTACGTGGCGTTTACC 5454490 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 || | ||||| || ||||| |||||||| ||||| || || ||||| ||| Sbjct 5454489 GACACGGAACGACTTGTTGGGGATGCCGCGAAAAACCAAGTGGCGCGCAACCCGGAGAAT 5454430 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || | || || || || || || ||||| |||||||| || || ||| Sbjct 5454429 ACGATTTTCGATGCAAAACGCCTGATTGGCCGCAAGTTCGATGACCCCTCGGTGCAATCT 5454370 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598 || || || ||||| | | |||| | | || | || ||||| | || | Sbjct 5454369 GACATGAAACACTGGCCGTTCAAAGTCATCGCTGGCAAAGGTGGCAAGCCACTAATCGAA 5454310 Query 195599 GTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCC-GAAGAAATTTCGTCTATGGTGTT 195657 || | | || || |||| |||| ||| | ||| || || ||||| | |||||| | Sbjct 5454309 GTGCATTACCAAGGAGAGACGAAATG-TTTCCACCCTGAGGAGATTTCTGCGATGGTGCT 5454251 Query 195658 GATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGT 195717 | |||||||| || | | ||||||||| | | ||| | |||||||| || ||| | Sbjct 5454250 GGGCAAGATGAAAGAAATTTCGGAATCTTACCTTGGTCGCCCAGTGAAAGAAGCGGTTAT 5454191 Query 195718 GACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTAT 195777 || || || || || |||| |||||| || || || || ||||| || |||| | || Sbjct 5454190 CACGGTGCCCGCGTATTTCAATGATTCTCAGCGCCAAGCCACAAAAGATGCTGGCACGAT 5454131 Query 195778 TGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGG 195837 ||| ||| | ||| ||| |||||||||| || ||||| || ||||||||||| ||||| Sbjct 5454130 TGCAGGTTTGAACGTACTTCGAATTATCAACGAGCCAACTGCAGCTGCAATTGCGTATGG 5454071 Query 195838 TCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTAC 195897 |||||||||| | | | ||| | | ||| ||||| || ||| | |||||||| || Sbjct 5454070 TCTGGACAAGCGCGGGTGTGGAGAGATGATTGTGTTGATTTTCGATATGGGTGGTGGCAC 5454011 Query 195898 GTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGG 195957 ||||| ||||| || | | ||||||| || || ||||| || ||| || || || Sbjct 5454010 CTTTGACGTCTCTCTCTTGACGATTGAAGACGGCATTTTCGAGGTGCGGGCAACGGCAGG 5453951 Query 195958 TGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTG-ATG 196016 || || ||| |||| || || || ||||| || || | | | | ||| || | | Sbjct 5453950 CGACACGCATTTAGGAGGCGAGGACTTCGACAATCGCCTGGT-GGACTTCTGTGTGCAGG 5453892 Query 196017 AGTTCCGTCGAAAGAATA---AGAAAGATAT-TTCTGGAA-ATCCTAGGGCTCTTCGTCG 196071 | ||| ||||||| | ||| || || || ||| | || | ||||| ||||| Sbjct 5453891 ACTTCAAGAGAAAGAACAGAGGGAAGGACATCAGCTCGAACAGCC--GTGCTCTGCGTCG 5453834 Query 196072 GCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGT 196131 || ||||| || ||||| || || || || || || || | || | | | Sbjct 5453833 TCTCCGGACTCAGTGCGAACGCGCGAAGCGCACCCTTTCCAGTAGCACGCAGGCGACCAT 5453774 Query 196132 TGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTT 196191 ||| || || ||| ||| || || ||||||| || | | || | || |||||||| Sbjct 5453773 TGAAATCGACTCGCTGTACGAAGGTATTGACTACTCTGTTTCCATCTCACGCGCACGTTT 5453714 Query 196192 TGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCG 196251 |||||| | | || | || | | | |||| || || || | || | Sbjct 5453713 TGAAGAACTTTGCATGGACTACTTCCGTCACTCGCTGGACCCGGTCGAGAAGGTGTTGAA 5453654 Query 196252 TGACGCAAAGATGGATAAG-TCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCC 196310 ||||| | || ||| || | || ||| |||| || || || || || || Sbjct 5453653 AGACGCTGGTACTGACAAGCGCTCA-GTAAGCGAAGTTGTACTGGTCGGGGGGTCCACGA 5453595 Query 196311 GTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAA 196370 | |||||||| || || || | || | |||||||| |||||| | Sbjct 5453594 GAATTCCGAAAATCCAGCAATTCATTACCGAATTCTTCAACGGTAAAGAACCCTGCCGGT 5453535 Query 196371 CGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAG 196430 | |||||||| |||||||| || || ||||| || || || || || |||||| || | Sbjct 5453534 CCATCAACCCCGATGAAGCCGTCGCGTATGGCGCTGCAGTGCAAGCCGCTATTATCAAGG 5453475 Query 196431 GTGTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGG 196490 |||| || | | || || | | || || || ||||| || || | ||||| | Sbjct 5453474 GTGTCACCAGCTCTCAAGTACAGCAGTTGCTCCTCCTCGATGTGGCGCCACTTTCCCTCG 5453415 Query 196491 GTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGA 196550 | || ||||| || ||||| || ||||||| | ||||| | |||| || || || || | Sbjct 5453414 GACTAGAAACTGCCGGTGGCGTCATGACTACACTTATTCCTCGGAATACGACGATCCCTA 5453355 Query 196551 CTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAG 196610 | |||||| ||| ||||| | ||||| || |||||||| || || || | ||||| | Sbjct 5453354 CAAAGAAGTCGCAAATCTTTACGACGTACTCTGATAATCAGCCCGGGGTGCTCATTCAGG 5453295 Query 196611 TATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGATTTG 196669 | | ||||| ||||| ||| || | || || ||| |||| | || | ||| | || Sbjct 5453294 TCTTCGAAGGTGAACG-TCCACTGACGAAAGACAACAATCTTTTGGGTAAATTCCACCTG 5453236 Query 196670 ACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGAC 196729 || || || | || ||| | || ||||| |||||| | ||| || || | ||| Sbjct 5453235 GATGGCATCCCTCCCGCCCCCCGGGGAGTTCCGCAGATTGAAGTTACGTTTGACTTGGAC 5453176 Query 196730 GCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATT 196789 ||||| || ||| | | ||| ||||| |||||||| | | || ||| |||| Sbjct 5453175 GCAAACGGCATTATGAGCGTGACAGCCGAGGACAAATCCACCGGGAAAAGCAGCCAGATC 5453116 Query 196790 GTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGAT 196849 ||| || || || || || || || |||| || || | || ||||| || || Sbjct 5453115 ACGATCACGAACGAGAAAGGACGACTCAGCCAGGACGAGATCAACCGCATGGTGCAGGAA 5453056 Query 196850 GCGGAAAAGTACAGGGAAGAAGACGA 196875 || || ||||||| | ||||| || Sbjct 5453055 GCAGAGAAGTACAAAGCTGAAGATGA 5453030 Score = 125 bits (138), Expect = 9e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || || || ||||| || || || || |||||||| || |||||| | || Sbjct 4842293 ATGCAGATTTTCGTCAAGACCCTCACAGGGAAGACCATCACCCTGGAAGTTGAGGCTTCC 4842234 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || | || || ||||||||||| ||||| || || || ||||| ||| Sbjct 4842233 GACACTATTGAAAATGTGAAGGCAAAGATTCAAGACAAGGAGGGGATCCCCCCCGACCAG 4842174 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || || || || ||||| || ||||| || | || ||| | || |||||| Sbjct 4842173 CAGAGGCTCATCTTCGCCGGCAAACAACTGGAAGACGGCAGAACTCTCTCCGACTACAAC 4842114 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGT 172070 | || ||||| || || || || || || Sbjct 4842113 ATCCAGAAGGAATCCACCCTTCATCTCGT 4842085 >seq7 Length=4216856 Score = 176 bits (194), Expect = 6e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||||||||||||||| |||||||| ||||| || || || ||| |||| Sbjct 3942672 ATGCAAATTTTTGTGAAAACCCTTACAGGAAAAACCATCACACTAGAAGTAGAGCCGTCT 3942731 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || | || || || ||||||||||| |||||||| || || || || Sbjct 3942732 GATACGATCGAGAATGTGAAGGCTAAAATTCAAGATAAAGAAGGCATCCCTCCTGACCAA 3942791 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || ||||| || |||||||| |||||||| | || || | || |||||| Sbjct 3942792 CAGAGGCTGATCTTTGCAGGGAAACAGCTGGAAGATGGCAGAACACTATCGGACTACAAC 3942851 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTGC 172091 |||| |||||||||||||| || | || | || | || |||||||| Sbjct 3942852 ATTCAGAAGGAGTCTACTCTTCATTTGGTGTTGAGATTACGAGGTGGTGC 3942901 Score = 131 bits (144), Expect = 2e-25 Identities = 170/234 (73%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || ||||||||||| ||||| || || || || || ||||| ||| |||| Sbjct 3942444 ATGCAGATTTTCGTGAAAACCCTAACTGGCAAGACGATTACGCTAGAGGTGGAGCCGTCG 3942503 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || | || ||| | || | || || ||||| || ||||| |||||||| |||||| Sbjct 3942504 GATACGGTAGAGAACGTGAAGACGAAAATACAAGACAAAGAAGGGATTCCACCTGATCAG 3942563 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || | || || ||||| || || || || |||||| | || | |||| |||||| Sbjct 3942564 CAGCGTTTGATCTTCGCTGGAAAGCAACTGGATGATGGAAGAACATTATCTGACTACAAC 3942623 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG--TGCAA 172093 |||| ||||| || || || ||| | || || | || || || || ||||| Sbjct 3942624 ATTCAGAAGGAATCGACCCTTCACTTGGTGTTACGACTGCGTGGCGGGATGCAA 3942677 Score = 109 bits (120), Expect = 7e-19 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| |||||||| || ||||| || |||||||| | ||||| ||| | || Sbjct 3940615 ATGCAGATCTTCGTGAAAACACTGACTGGGAAGACTATCACTTTGGAGGTGGAGCCCTCC 3940674 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| ||| | || || || || ||||| |||||||| |||||||||||||| Sbjct 3940675 GATACGATCGAAAACGTGAAGGCGAAAATCCAAGACAAGGAAGGGATTCCACCCGATCAA 3940734 Query 171982 CAACGACT 171989 || || || Sbjct 3940735 CAGCGTCT 3940742 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171931 GATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTT 171990 || ||| | ||||| || ||||| || |||||||| ||||| || || || ||||| ||| Sbjct 3942285 GAGAACGTGAAAGCAAAAATTCAGGACAAGGAAGGTATTCCGCCAGACCAACAACGTCTT 3942344 Query 171991 ATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAG 172050 |||||||| || || || || || || ||| | || | | ||||||||| |||| || Sbjct 3942345 ATTTTTGCAGGAAAGCAACTGGAGGACGGAAGAACGTTGTCCGATTACAACATTCAGAAA 3942404 Query 172051 GAGTCTACTCTACACCTTGTTCT 172073 || || || || ||| | || || Sbjct 3942405 GAATCAACACTTCACTTGGTACT 3942427 >seq12 Length=3345923 Score = 89.7 bits (98), Expect = 7e-13 Identities = 181/269 (67%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 78644 GAGACCGGCACCCCGTATATGCTATACAAAGACAGCTGTAACAGAAAGTCTAACCAAAAG 78703 ||||| || || ||||| ||| | ||||| ||| ||| || |||||| ||||| ||| Sbjct 1181776 GAGACAGGGACGCCGTACATGATGTACAAGGACGCCTGCAATAGAAAGAGCAACCAGAAG 1181717 Query 78704 AACCTAGGTGTCATCAAAAGCTCTAACCTTTGCACAGAAATTCTGGAATACACGGATAAG 78763 ||||| || ||||||| | || | || ||||||||| | || ||| | ||| Sbjct 1181716 AACCTTGGCACCATCAAAGGTAGCAATTTATGTACAGAAATTGTTGAGTACGCCAGCAAG 1181657 Query 78764 AATGAAACAGCTGTATGTAATCTAGGGTCTATCGCTCTACCAAAGTTTGTTGATCGAGAA 78823 ||||| ||||| || || | | |||| | | || || |||| ||||||||| ||| Sbjct 1181656 GATGAAGTGGCTGTCTGCAACTTGGCGTCTCTGTCCCTTCCGAAGTATGTTGATCGGGAA 1181597 Query 78824 TTAAAGACATTTGATTATTCAAAGCTCCACGAAATTACAAAAATCGTAACTAAAAATTTA 78883 ||||| || |||| || || | | || ||| ||| || ||| | Sbjct 1181596 ACGAAGACTTTCAATTACGACAAACTAAAAGCTGTTGTCAAAGTCGCGACACGCAATCTG 1181537 Query 78884 AATCGTGTAATTGACCGTAACTACTACCC 78912 ||||| || || ||| | ||||||||||| Sbjct 1181536 AATCGCGTGATCGACAGGAACTACTACCC 1181508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657855237523120