Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq7 156 4e-33 seq1 102 7e-17 >seq7 Length=4216856 Score = 156 bits (172), Expect = 4e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| ||||| || || || |||||||| || || || | | Sbjct 3942444 ATGCAGATTTTCGTGAAAACCCTAACTGGCAAGACGATTACGCTAGAGGTGGAGCCGTCG 3942503 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || ||||| |||| || || ||| || |||||||||||||| || || || ||||| Sbjct 3942504 GATACGGTAGAGAACGTGAAGACGAAA-ATACAAGACAAAGAAGGGATTCCACCTGATCA 3942562 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||||||||||| || || || || ||||| ||| |||| | || || || || Sbjct 3942563 GCAGCGTTTGATCTTCGCTGGAAAGCAACTGGATGATGGAAGAACATTATCTGACTACAA 3942622 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||| ||||||||||| || ||||||||||| ||| |||| || || Sbjct 3942623 CATTCAGAAGGAATCGACCCTTCACTTGGTGTTACGACTGCGTGGCGG 3942670 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| || ||| | ||||| || || || ||||| || || || |||||||| | | Sbjct 3942671 GATGCAAATTTTTGTGAAAACCCTTACAGGAAAAACCATCACACTAGAAGTAGAGCCGTC 3942730 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || | || || || || ||||| |||||||| || ||||| || || Sbjct 3942731 TGATACGATCGAGAATGTGAAGGCTAAAATTCAAGATAAAGAAGGCATCCCTCCTGACCA 3942790 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | |||||||||| |||||||||||||| ||| |||| | || || || || Sbjct 3942791 ACAGAGGCTGATCTTTGCAGGGAAACAGCTGGAAGATGGCAGAACACTATCGGACTACAA 3942850 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||| ||||| || || || || ||||||||| |||| || || || Sbjct 3942851 CATTCAGAAGGAGTCTACTCTTCATTTGGTGTTGAGATTACGAGGTGG 3942898 >seq1 Length=11360811 Score = 102 bits (112), Expect = 7e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 ||||||||||| || | || || || || || || || || || || ||||| || || Sbjct 4842296 ACGATGCAGATTTTCGTCAAGACCCTCACAGGGAAGACCATCACCCTGGAAGTTGAGGCT 4842237 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 ||||||| | |||| || || |||||| |||||||| || || || || ||||| Sbjct 4842236 TCCGACACTATTGAAAATGTGAAGGCAAAGATTCAAGACAAGGAGGGGATCCCCCCCGAC 4842177 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || | | ||||| ||||| ||||| ||||| || |||| | || || || Sbjct 4842176 CAGCAGAGGCTCATCTTCGCCGGCAAACAACTGGAAGACGGCAGAACTCTCTCCGACTAC 4842117 Query 24881 AACATTCAAAAGGAATCGACACTACA 24906 ||||| || |||||||| || || || Sbjct 4842116 AACATCCAGAAGGAATCCACCCTTCA 4842091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449892701739880