Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq7 113 4e-20 >seq7 Length=4216856 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| ||||| | || || |||||||| || | ||| ||||| Sbjct 3942672 ATGCAAATTTTTGTGAAAACCCTTACAGGAAAAACCATCACACTAGAAGTAGAGCCGTCT 3942731 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | || || || ||| || ||||||||| | || || ||| Sbjct 3942732 GATACGATCGAGAATGTGAAGGCTAAAATTCAAGATAAAGAAGGCATCCCTCCTGACCAA 3942791 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||| || ||||||||||| |||| ||||||| | |||| |||||| Sbjct 3942792 CAGAGGCTGATCTTTGCAGGGAAACAGCTGGAAGATGGCAGAACACTATCGGACTACAAC 3942851 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || || ||||| | || ||||||| ||| | ||||| || Sbjct 3942852 ATTCAGAAGGAGTCTACTCTTCATTTGGTGTTGAGATTACGAGGTGG 3942898 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || || || ||||| |||| ||||| || ||||| | || |||||| Sbjct 3942443 AATGCAGATTTTCGTGAAAACCCTAACTGGCAAGACGATTACGCTAGAGGTGGAGCCGTC 3942502 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| || | | || || ||| || ||||||||||| | || ||||| Sbjct 3942503 GGATACGGTAGAGAACGTGAAGACGAAAATACAAGACAAAGAAGGGATTCCACCTGATCA 3942562 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || | | || | || || || || ||||| |||| |||||| | | || ||||| Sbjct 3942563 GCAGCGTTTGATCTTCGCTGGAAAGCAACTGGATGATGGAAGAACATTATCTGACTACAA 3942622 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||| || ||||| || | ||| |||||||| ||||||| || || Sbjct 3942623 CATTCAGAAGGAATCGACCCTTCACTTGGTGTTACGACTGCGTGGCGG 3942670 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||| ||||| | || || |||||| | ||||||| ||| || || || |||||| Sbjct 3942309 GACAAGGAAGGTATTCCGCCAGACCAACAACGTCTTATTTTTGCAGGAAAGCAACTGGAG 3942368 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 || | ||||| || | |||||||||||||| |||||||| || | ||| |||| | Sbjct 3942369 GACGGAAGAACGTTGTCCGATTACAACATTCAGAAAGAATCAACACTTCACTTGGTACTT 3942428 Query 110486 AGACTGCGAGGGGGAA 110501 || |||| || |||| Sbjct 3942429 CGATTGCGTGGAGGAA 3942444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412837217557403