Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq7 132 4e-26 seq1 96.9 3e-15 >seq7 Length=4216856 Score = 132 bits (146), Expect = 4e-26 Identities = 158/212 (75%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 29577 CACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATC 29636 |||||| ||||| || ||||| || |||||||| || || | | || | |||||| Sbjct 3942653 CACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGATAATGTTCTTCCATCATC 3942594 Query 29637 GAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTG 29696 ||||| || ||||| | ||||| | |||||||| || ||||| || ||||||||||| Sbjct 3942593 CAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGTGGAATCCCTTCTTTGTCTTG 3942534 Query 29697 TAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTT 29755 | ||||| || || || | ||||| || || || | || || || || || || || | Sbjct 3942533 T-ATTTTCGTCTTCACGTTCTCTACCGTATCCGACGGCTCCACCTCTAGCGTAATCGTCT 3942475 Query 29756 TGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||||||| |||||| || || ||||||||| Sbjct 3942474 TGCCAGTTAGGGTTTTCACGAAAATCTGCATT 3942443 Score = 109 bits (120), Expect = 4e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || |||||||||||| || || || || |||||||| || |||| | || | ||| Sbjct 3942884 CAACACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGATAGTGTTCTGCCATC 3942825 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || ||||| || ||| | |||| || || || || || || || || ||||| || Sbjct 3942824 TTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGTTGGTCAGGAGGGATGCCTTCTTTATC 3942765 Query 29694 TTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752 ||| |||||| | || ||| | || | || ||||| | |||||||| || || || | Sbjct 3942764 TTG-AATTTTAGCCTTCACATTCTCGATCGTATCAGACGGCTCTACTTCTAGTGTGATGG 3942706 Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||| || || | |||||| ||||| || ||||| Sbjct 3942705 TTTTTCCTGTAAGGGTTTTCACAAAAATTTGCAT 3942672 Score = 87.8 bits (96), Expect = 1e-12 Identities = 110/150 (73%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | ||| || || ||||| ||||| || |||||||| |||||||| ||||| | Sbjct 3942443 TCCTCCACGCAATCGAAGTACCAAGTGAAGTGTTGATTCTTTCTGAATGTTGTAATCGGA 3942384 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | || || ||||| || || ||| | || | | ||| || || ||||| Sbjct 3942383 CAACGTTCTTCCGTCCTCCAGTTGCTTTCCTGCAAAAATAAGACGTTGTTGGTCTGGCGG 3942324 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTT 29708 |||||| || ||||| || |||||||| || Sbjct 3942323 AATACCTTCCTTGTCCTG-AATTTTTGCTT 3942295 >seq1 Length=11360811 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||| |||||||| || || ||||| || || | | || | || || ||||| Sbjct 4842090 ATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCTGCCGTCTTCCAGTTG 4842149 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 |||||| || | || | || ||||| || || || || ||||| |||||||| ||| | Sbjct 4842150 TTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTG-AATCT 4842208 Query 29703 TTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAG 29761 ||| || ||| |||| | |||||| ||| || ||||| || || || || || || | Sbjct 4842209 TTGCCTTCACATTTTCAATAGTGTCGGAAGCCTCAACTTCCAGGGTGATGGTCTTCCCTG 4842268 Query 29762 TTAAGGTTTTAACAAATATCTGCAT 29786 | | ||| || || || |||||||| Sbjct 4842269 TGAGGGTCTTGACGAAAATCTGCAT 4842293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385215110777811