Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1 214 1e-49 >seq1 Length=11360811 Score = 214 bits (236), Expect = 1e-49 Identities = 929/1456 (64%), Gaps = 34/1456 (2%) Strand=Plus/Plus Query 281411 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 281470 || ||||| || |||| ||||| | | ||| || || || ||||| ||||| || ||| Sbjct 5453135 GTGGATTTGTCCTCGGCTGTCACGCTCATAATGCCGTTTGCGTCCAAGTCAAACGTAACT 5453194 Query 281471 TCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGA 281530 ||||| || || || || | | || || ||||| || |||| | ||| | |||| | Sbjct 5453195 TCAATCTGCGGAACTCCCCGGGGGGCGGGAGGGATGCCATCCAGGTGGAATTTACCCAAA 5453254 Query 281531 TTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTT 281590 ||| || ||||| || | | |||||||| ||||| | || || || | | Sbjct 5453255 AGATTGTTGTCTTTCGTCAGTGGACGTTCACCTTCGAAGACCTGAATGAGCACCCCGGGC 5453314 Query 281591 TGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTA 281650 |||||||| || || || ||||| | | || || || ||| || || || || | | Sbjct 5453315 TGATTATCAGAGTACGTCGTAAAGATTTGCGACTTCTTTGTAGGGATCGTCGTATTCCGA 5453374 Query 281651 TCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACA 281710 ||||| | ||||| | ||||| || ||||||| || || ||||| || | ||| Sbjct 5453375 GGAATAAGTGTAGTCATGACGCCACCGGCAGTTTCTAGTCCGAGGGAAAGTGGCGCCACA 5453434 Query 281711 TCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGA 281770 || | |||| | | || | || || ||| | |||||| ||||| Sbjct 5453435 TCGAGGAGGAGCAACTGCTGTACTTGAGAGCTGGTGACACCCTTGATAATAGCGGCTTGC 5453494 Query 281771 ATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCA 281830 | ||||| ||||| || || |||||||| || || | | ||| |||||| Sbjct 5453495 ACTGCAGCGCCATACGCGACGGCTTCATCGGGGTTGATGGACCGGCAGGGTTCTTTACCG 5453554 Query 281831 TTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAAT 281890 ||||| || | | || | ||| | || ||||| | | || || || || | | Sbjct 5453555 TTGAAGAATTCGGTAATGAATTGCTGGATTTTCGGAATTCTCGTGGACCCCCCGACCAGT 5453614 Query 281891 ACAATTTCATGCACCTGTGATTTATCCAGTTTT-GAATCCAATAAAACTTTTTCAACGGG 281949 |||| ||| || || | | |||| | || || || || || || || Sbjct 5453615 ACAACTTCGCTTAC-TGAGCGCTTGTCAGTACCAGCGTCTTTCAACACCTTCTCGACCGG 5453673 Query 281950 TTCAAGACCAGCT-CTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAG 282008 || || | || | || |||| ||||||||||| || || | || ||| Sbjct 5453674 GTCCAG-CGAGTGACGGAAGTAGTCCATGCAAAGTTCTTCAAAACGTGCGC--GTGAGAT 5453730 Query 282009 TGA--CATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGA 282066 || || || ||||| |||||| ||| || || | |||||| || | || || Sbjct 5453731 GGAAACAGAGTAGTCAATACCTTCGTACAGCGAGTCGATTTCAATGGTCGCCTGCGTGCT 5453790 Query 282067 AGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAA-----GGCT 282121 | || || | || || || ||||| || |||| || | || | |||| Sbjct 5453791 ACTGGAAAGGGTGCGCTTCGCGCGTTCGCACTGAGTCCGGAGACGACGCAGAGCACGGCT 5453850 Query 282122 TTT---GCTGAT-TGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCA 282177 || |||||| | ||| |||||| | |||||||||| || | ||||| | Sbjct 5453851 GTTCGAGCTGATGTCCTTCCC-TCTGTTCT-----TTCTCTTGAAGTCCTGCACACAGAA 5453904 Query 282178 TGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCT 282237 || || ||||| || || || || ||||| || | || | |||| ||| || | Sbjct 5453905 GTCCACCAGGCGATTGTCGAAGTCCTCGCCTCCTAAATGCGTGTCGCCTGCCGTTGCCCG 5453964 Query 282238 TACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCAT 282297 || | ||||| || ||||||| | ||| |||| || ||| ||| ||||||||||| Sbjct 5453965 CACCTCGAAAATGCCGTCTTCAATCGTCAAGAGAGAGACGTCAAAGGTGCCACCACCCAT 5454024 Query 282298 ATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGC 282357 ||| ||||| | ||| |||| ||| | || || ||||||||||||| || Sbjct 5454025 ATCGAAAATCAACACAATCATCTCTCCACACCCGCGCTTGTCCAGACCATACGCAATTGC 5454084 Query 282358 AGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATC 282417 ||| |||||||| || || ||||||| | || || | ||| ||||| | || ||||| Sbjct 5454085 AGCTGCAGTTGGCTCGTTGATAATTCGAAGTACGTTCAAACCTGCAATCGTGCCAGCATC 5454144 Query 282418 TTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGT 282477 ||| |||||||| | || ||||| || ||||| || || || || ||||| || ||| | Sbjct 5454145 TTTTGTGGCTTGGCGCTGAGAATCATTGAAATACGCGGGCACCGTGATAACCGCTTCTTT 5454204 Query 282478 TACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGA 282537 ||| |||| |||| | ||| |||||| || | | | ||| | || Sbjct 5454205 CACTGGGCGACCAAGGTAAGATTCCGAAATTTCTTTCATCTTGCCCAGCACCATCGCAGA 5454264 Query 282538 AATTTGTTC----TGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATG 282593 ||| | || |||| || || || | || ||| || ||||| | || Sbjct 5454265 AATCTCCTCAGGGTGGA-AACAT---TTCGTCTCTCCTTGGTAATGCACTTCGATTAGTG 5454320 Query 282594 GTTTATTACC---AACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACAC 282650 | || ||| || || ||||| || ||||| | |||||| || ||||| || Sbjct 5454321 GCTTGCCACCTTTGCCAGCGATGACTTTGAACGGCCAGTGTTTCATGTCAGATTGCACCG 5454380 Query 282651 TTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGAT 282710 |||||| || | | ||||| | ||||||||||| ||||| ||||| || | Sbjct 5454381 AGGGGTCATCGAACTTGCGGCCAATCAGGCGTTTTGCATCGAAAATCGTATTCTCCGGGT 5454440 Query 282711 TAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAA 282770 | || |||| | ||| || ||||| |||| || |||| || || ||||| | | Sbjct 5454441 TGCGCGCCACTTGGTTTTTCGCGGCATCCCCAACAAGTCGTTCCGTGTCGGTAAACGCCA 5454500 Query 282771 CATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTT 282830 | || || || || ||||| || || ||||| |||||||| ||||| || | |||||| Sbjct 5454501 CGTACGACGGCGTAGTGCGGTTGCCCTGATCGTTCGCAATGATTTCCACCGTGTCATTTT 5454560 Query 282831 GCCATACACCTACACA 282846 ||| ||||| || || Sbjct 5454561 TCCACACACCAACGCA 5454576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740587637580846