Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq7 154 3e-32 seq1 150 4e-31 seq18 111 3e-19 >seq7 Length=4216856 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| |||| || | || || || || |||||||| || ||||| || || || || || Sbjct 3942899 ACCACCTCGTAATCTCAACACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGA 3942840 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 ||| |||| || ||||| || ||||| || |||||||| || || ||||| || ||||| Sbjct 3942839 TAGTGTTCTGCCATCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGTTGGTCAGGAGG 3942780 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || ||||| ||||||||||| || || || ||||| || ||||||||| || ||||| Sbjct 3942779 GATGCCTTCTTTATCTTGAATTTTAGCCTTCACATTCTCGATCGTATCAGACGGCTCTAC 3942720 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| | || || || || ||||| | || || ||||| || ||||| Sbjct 3942719 TTCTAGTGTGATGGTTTTTCCTGTAAGGGTTTTCACAAAAATTTGCAT 3942672 Score = 123 bits (136), Expect = 5e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | ||| || || || ||||| || || ||||||||||| || || ||||| || Sbjct 3942442 CCTCCACGCAATCGAAGTACCAAGTGAAGTGTTGATTCTTTCTGAATGTTGTAATCGGAC 3942383 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | |||| ||||| || ||||| ||||| ||||| || || | |||||| ||||| || Sbjct 3942382 AACGTTCTTCCGTCCTCCAGTTGCTTTCCTGCAAAAATAAGACGTTGTTGGTCTGGCGGA 3942323 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTC 82741 || |||||||| || ||||| |||||||| || || || Sbjct 3942322 ATACCTTCCTTGTCCTGAATTTTTGCTTTCACGTTCTC 3942285 Score = 113 bits (124), Expect = 9e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 || ||||| || || ||||| ||||| || || || ||||||| |||| || || || Sbjct 3942652 ACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGATAATGTTCTTCCATCATCC 3942593 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 ||||| |||||||| ||||| | | || ||||| || || || ||||| || ||||| Sbjct 3942592 AGTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGTGGAATCCCTTCTTTGTCTTGT 3942533 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 || || | || || || || | |||||| || || || || | || ||||||||| Sbjct 3942532 ATTTTCGTCTTCACGTTCTCTACCGTATCCGACGGCTCCACCTCTAGCGTAATCGTCTTG 3942473 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || | || || || || ||||||||| Sbjct 3942472 CCAGTTAGGGTTTTCACGAAAATCTGCATT 3942443 >seq1 Length=11360811 Score = 150 bits (166), Expect = 4e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || ||||| ||||| || || || || || ||| |||| |||||||| |||||| Sbjct 4842091 TGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCTGCCGTCTTCCAGTTGT 4842150 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || || ||||| || || || || || || || || || ||||| |||||||||||| Sbjct 4842151 TTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTGAATCTTT 4842210 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || ||||||||||| || || || || ||||||| || || ||||| ||||| Sbjct 4842211 GCCTTCACATTTTCAATAGTGTCGGAAGCCTCAACTTCCAGGGTGATGGTCTTCCCTGTG 4842270 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| || || |||||||| Sbjct 4842271 AGGGTCTTGACGAAAATCTGCAT 4842293 >seq18 Length=2561326 Score = 111 bits (122), Expect = 3e-19 Identities = 206/297 (69%), Gaps = 4/297 (1%) Strand=Plus/Plus Query 198312 CTCGAAAAGGCGGAAACACATGACCCTCTATGGAATGCATCGCAAATACAGATGATAAGA 198371 |||||| || || || ||||| | |||||||||||| |||| ||| | || || Sbjct 1981657 CTCGAAGCAGCAGAGACGTATGACGCGCTATGGAATGCAGCGCAGCAGCAGCTAATGAGG 1981716 Query 198372 GAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGACA 198431 |||||||| ||||| | | | | | ||||||||||| || ||||| || || |||| Sbjct 1981717 GAAGGAAAGATGCACGGCTATCTGCGTATGTACTGGGCGAAGAAGATGCTGGAGTGGATG 1981776 Query 198432 AGAACACCGGAAGACGC-TTTGAGTTATAGTATCTATCTAAACAATAAGTACGAACTAGA 198490 | | | || | || || ||| | | ||| || | || |||| ||| || || Sbjct 1981777 AAATCGCCTGCTGAGGCACTTGCGGGA-GCTATACATTTGAATGATAAATACAGCCTGGA 1981835 Query 198491 CGGCACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGAT-TACATGATC 198549 ||| |||||||| ||||| ||||| || || |||||||| | | |||| | | || || | Sbjct 1981836 CGGGACGGATCCCAACGGTTACGTCGGATGCATGTGGTCGA-TCGCGGCTCTGCACGACC 1981894 Query 198550 GAGCGTGGAAAGAAAGACCTATATTTGGGAAGATAAGATATATGAATTATGAGGGTT 198606 | | | ||| ||||| |||| ||||||| | || |||||||| || | |||| Sbjct 1981895 AGCCTTTCAGAGAGAGACCCATATATGGGAAGGTTAGGTATATGAACTACGCTGGTT 1981951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981816243115269