Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq18 120 5e-22 >seq18 Length=2561326 Score = 120 bits (132), Expect = 5e-22 Identities = 203/289 (70%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 182995 CTCGAAAAGGCAGAAACACATGACCCTCTATGGAATGCATCACAAATACAGATGATGAGA 183054 |||||| ||||| || ||||| | |||||||||||| | || ||| | ||||| Sbjct 1981657 CTCGAAGCAGCAGAGACGTATGACGCGCTATGGAATGCAGCGCAGCAGCAGCTAATGAGG 1981716 Query 183055 GAAGGAAAAATGCATAGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAATGGACA 183114 |||||||| ||||| | | | | || ||||||||||| || ||||| || || |||| Sbjct 1981717 GAAGGAAAGATGCACGGCTATCTGCGTATGTACTGGGCGAAGAAGATGCTGGAGTGGATG 1981776 Query 183115 AGAACTCCGGAAGATGC-TTTGAGTTATAGTATCTATATGAACAATAAGTACGAACTAGA 183173 | | | || | || || ||| | | ||| || |||| |||| ||| || || Sbjct 1981777 AAATCGCCTGCTGAGGCACTTGCGGGA-GCTATACATTTGAATGATAAATACAGCCTGGA 1981835 Query 183174 CGGTACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGAT-TACACGATA 183232 ||| |||||||| ||||| ||||| || || |||||||| | | |||| | | ||||| Sbjct 1981836 CGGGACGGATCCCAACGGTTACGTCGGATGCATGTGGTCGA-TCGCGGCTCTGCACGACC 1981894 Query 183233 GAGCGTGGAAAGAAAGACCTATATTTGGAAAGATAAGATATATGAATTA 183281 | | | ||| ||||| |||| ||| ||| | || |||||||| || Sbjct 1981895 AGCCTTTCAGAGAGAGACCCATATATGGGAAGGTTAGGTATATGAACTA 1981943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903401364110560