Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1 111 2e-19 seq12 87.8 2e-12 seq7 86.0 6e-12 >seq1 Length=11360811 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | |||||| || ||||| || ||||| ||| | || ||| || || || Sbjct 4842090 ATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCTGCCGTCTTCCAGTTG 4842149 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||||| ||| | ||||||| |||||||||||| ||||| || |||||||| ||||| Sbjct 4842150 TTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTGAATCTT 4842209 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 | ||| | | |||| ||||||| | ||| || || | ||||| ||| || || || Sbjct 4842210 TGCCTTCACATTTTCAATAGTGTCGGAAGCCTCAACTTCCAGGGTGATGGTCTTCCCTGT 4842269 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || || || |||||||||||||| Sbjct 4842270 GAGGGTCTTGACGAAAATCTGCAT 4842293 >seq12 Length=3345923 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 148836 TTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTG 148895 ||||| || ||| |||||| | | |||||| || || || | || | |||||| Sbjct 1181637 TTGCAGACAGCCACTTCATCCTTGCTGGCGTACTCAACAATTTCTGTACATAAATTGCTA 1181696 Query 148896 CATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGC 148955 | |||||| ||| | |||||| || |||||||| || ||||| ||||||||||||| | Sbjct 1181697 CCTTTGATGGTGCCAAGGTTCTTCTGGTTGCTCTTTCTATTGCAGGCGTCCTTGTACATC 1181756 Query 148956 ATGTACGG 148963 |||||||| Sbjct 1181757 ATGTACGG 1181764 >seq7 Length=4216856 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGA 133512 ||||| | || ||||| ||||| || ||||| || | || ||| | || || | Sbjct 3942877 AAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTC--CGATAGTGTTCTGCCATCTTCCA 3942820 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 |||| || || || | || |||| ||| ||||| |||||||||||||| || || ||| Sbjct 3942819 GCTGTTTCCCTGCAAAGATCAGCCTCTGTTGGTCAGGAGGGATGCCTTCTTTATC-TTGA 3942761 Query 133573 TCTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 ||| | ||| | | ||| | ||| || | ||||| || || | |||| |||||| Sbjct 3942760 ATTTTAGCCTTCACATTCTCGATCGTATCAGACGGCTCTACTTCTAGTGTGATGGTTTTT 3942701 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || ||||| || ||||| ||||| Sbjct 3942700 CCTGTAAGGGTTTTCACAAAAATTTGCAT 3942672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483415536756040