Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq7 104 2e-17 >seq7 Length=4216856 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 ||||||||||| || || || || || || |||||||| || || | ||| | | | Sbjct 3942658 CGTAACACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGATAATGTTCTTCCA 3942599 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || |||| ||| ||||| || || ||||||||||||||||| | || | ||||||||| Sbjct 3942598 TCATCCAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGTGGAATCCCTTCTTTG 3942539 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713 || |||||| || | || | || || || || | ||||| || | ||| || Sbjct 3942538 TCTTGTATTTTC-GTCTTCACGTTCTCTACCGTATCCGACGGCTCCACCTCTAGCGTAAT 3942480 Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || || |||| ||||| || || |||||||| Sbjct 3942479 CGTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCAT 3942444 Score = 89.7 bits (98), Expect = 3e-13 Identities = 118/163 (72%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || || || | ||| || | ||||| || || || ||||| || ||| Sbjct 3942454 AAAATCTGCATTCCTCCACGCAATCGAAGTACCAAGTGAAGTGTTGATTCTTTCTGAATG 3942395 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||||||||| | || | | |||| |||| ||| ||||| |||||||| | ||| || Sbjct 3942394 TTGTAATCGGACAACGTTCTTCCGTCCTCCAGTTGCTTTCCTGCAAAAATAAGACGTTGT 3942335 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCA 33673 || ||| |||| | |||||| ||||| |||||| ||||| Sbjct 3942334 TGGTCTGGCGGAATACCTTCCTTGTCCTGAATTTTTGCTTTCA 3942292 Score = 89.7 bits (98), Expect = 3e-13 Identities = 164/238 (69%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 33513 AAAATCGTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTT 33572 |||| | ||||||||| || | ||||||||||| ||||| ||| || || ||||| Sbjct 3942908 AAAAGCCGCACCACCTCGTAATCTCAACACCAAATGAAGAGTAGACTCCTTCTGAATGTT 3942849 Query 33573 GTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTG 33632 ||| || || ||||| | | || |||| ||||| || ||||| |||| | ||| || Sbjct 3942848 GTAGTCCGATAGTGTTCTGCCATCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGTTG 3942789 Query 33633 ATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGC 33691 || | || | |||||||| || |||||| ||| |||| || | || || Sbjct 3942788 GTCAGGAGGGATGCCTTCTTTATCTTGAATTTTAGCCTTC-ACATTCTCGATCGTATCAG 3942730 Query 33692 TTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || | ||||| ||||| ||||| | ||||| ||||| || ||||| Sbjct 3942729 ACGGCTCTACTTCTAGTGTGATGGTTTTTCCTGTAAGGGTTTTCACAAAAATTTGCAT 3942672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328700510704320