Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq7 113 1e-19 seq1 111 4e-19 >seq7 Length=4216856 Score = 113 bits (124), Expect = 1e-19 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || ||||||||||| ||||| | ||||| || ||||| || |||| Sbjct 3942687 AAAACCCTTACAGGAAAAACCATCACACTAGAAGTAGAGCCGTCTGATACGATCGAGAAT 3942746 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || |||||||| |||||||| || || ||| || || || ||||| Sbjct 3942747 GTGAAGGCTAAAATTCAAGATAAAGAAGGCATCCCTCCTGACCAACAGAGGCTGATCTTT 3942806 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || ||| |||||||||| || || | | || |||||| | ||||| |||||| Sbjct 3942807 GCAGGGAAACAGCTGGAAGATGGCAGAACACTATCGGACTACAACATTCAGAAGGAGTCT 3942866 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 |||||||| | || |||||| | ||| Sbjct 3942867 ACTCTTCATTTGGTGTTGAGATTACGA 3942893 Score = 100 bits (110), Expect = 7e-16 Identities = 99/127 (78%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 206247 AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGC 206306 ||||||||| ||||| || || ||||| ||| ||| ||| ||| | ||||| || || Sbjct 3942294 AAAGCAAAA-ATTCAGGACAAGGAAGGTATTCCGCCAGACCAACAACGTCTTATTTTTGC 3942352 Query 206307 CGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366 |||||||| |||| || ||||| || ||| ||||||||||| | |||||||| || || Sbjct 3942353 AGGAAAGCAACTGGAGGACGGAAGAACGTTGTCCGATTACAACATTCAGAAAGAATCAAC 3942412 Query 206367 TCTTCAC 206373 |||||| Sbjct 3942413 ACTTCAC 3942419 >seq1 Length=11360811 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || |||||||| || || ||||| ||||||| || ||| ||| Sbjct 4842290 CAGATTTTCGTCAAGACCCTCACAGGGAAGACCATCACCCTGGAAGTTGAGGCTTCCGAC 4842231 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| |||||||||||| || || || || || ||| || Sbjct 4842230 ACTATTGAAAATGTGAAGGCAAAGATTCAAGACAAGGAGGGGATCCCCCCCGACCAGCAG 4842171 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||||||||| || || ||||||| || || ||| | |||| |||||| || Sbjct 4842170 AGGCTCATCTTCGCCGGCAAACAACTGGAAGACGGCAGAACTCTCTCCGACTACAACATC 4842111 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| || || || ||||| || || Sbjct 4842110 CAGAAGGAATCCACCCTTCATCTCGT 4842085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181807611249191