Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq7 114 1e-20 >seq7 Length=4216856 Score = 114 bits (126), Expect = 1e-20 Identities = 160/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGT 131961 || || | ||| |||||||| | | ||||| || |||||||||||||| | | || | Sbjct 3942892 CGTAATCTCAACACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGATAGTGTT 3942833 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || | ||||| |||||||| || | | |||| || | |||||| || ||||| ||||| Sbjct 3942832 CTGCCA-TCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGTTGGTCAGGAGGGATGCC 3942774 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||||||||| |||||| |||| | || | ||||| | |||||| ||||| | Sbjct 3942773 TTCTTTATCTTGAATTTTAGCCTTCACATTCTCGATCGTATCAGACGGCTCTACTTCTAG 3942714 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| || || || ||||| | ||||| ||||| Sbjct 3942713 TGTGATGGTTTTTCCTGTAAGGGTTTTCACAAAAATTTGCAT 3942672 Score = 105 bits (116), Expect = 6e-18 Identities = 162/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGG 131960 ||||| || || ||||| || | | | || || || |||||||||||||| | | ||| Sbjct 3942665 ACGCAGTCGTAACACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGATAATGT 3942606 Query 131961 TACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGC 132020 | | | || || || || || || | |||| | |||||| ||||| || || || | Sbjct 3942605 TCTTCCA-TCATCCAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGTGGAATCC 3942547 Query 132021 CTTCTTTATCG-GTAATTTTTTGT-TTCAACTGTTCCACAGTATCGGTCGGCTCCACTTC 132078 ||||||| || ||| |||| || |||| | || || ||||| | ||||||||| || Sbjct 3942546 CTTCTTTGTCTTGTA--TTTTCGTCTTCACGTTCTCTACCGTATCCGACGGCTCCACCTC 3942489 Query 132079 GACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | ||| | ||| || ||||| || ||||| | |||||||||||| Sbjct 3942488 TAGCGTAATCGTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCAT 3942444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476606010895560