Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_026242.1 Length=145704 Score E Sequences producing significant alignments: (Bits) Value seq25 109 5e-19 seq43 102 8e-17 seq29 91.5 1e-13 >seq25 Length=2059312 Score = 109 bits (120), Expect = 5e-19 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| ||||||||||||||||| |||||| ||||||||||||| |||||||||||||| Sbjct 1681598 GCGGGCATGGTCTAGTGGTTATGACGTCTGCCTTACACGCAGAAGATCCCGGGTTCAATC 1681539 Query 39838 CCCGGTGCCCGTA 39850 ||||||||||||| Sbjct 1681538 CCCGGTGCCCGTA 1681526 >seq43 Length=545247 Score = 102 bits (112), Expect = 8e-17 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 39772 TATCAGGCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGT 39831 || ||||||||||||||||||||| |||| |||||| | ||||||||||||||||| || Sbjct 249937 TACCAGGCGGGTATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGGTCCCGAGT 249996 Query 39832 TCAATCCCCGGTGCCCGTA 39850 || |||| ||||||||||| Sbjct 249997 TCGATCCTCGGTGCCCGTA 250015 >seq29 Length=1657614 Score = 91.5 bits (100), Expect = 1e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 |||||||||||||||||| || | |||||| | ||||||||||||||||| |||| ||| Sbjct 686873 GCGGGTATGGTCTAGTGGCTACGACGTCTGCCTAACACGCAGAAGGTCCCGAGTTCGATC 686932 Query 39838 CCCGGTGCCCGTA 39850 | ||||||||||| Sbjct 686933 CTCGGTGCCCGTA 686945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466119725066240