Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq12 129 8e-25 >seq12 Length=3345923 Score = 129 bits (142), Expect = 8e-25 Identities = 398/609 (65%), Gaps = 20/609 (3%) Strand=Plus/Minus Query 68983 GCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTG 69042 || || || || || || || |||||| |||| || || |||||| || |||||||| Sbjct 1219470 GCAAGCTCGCAGCTAGCTTCCAATGCAGCGTAGTATATGCATTCGAATATATTCTTATTT 1219411 Query 69043 AGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAAT 69102 | ||| || || | ||||||||| || || | | || || || || || ||||| Sbjct 1219410 AACACTTTGGCATCCACACTATCGAAGGGGTAGCGCATCAGCATGAAGGCGTCGGCCAAA 1219351 Query 69103 CCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCA-GCTTCTGGAAT 69161 || || || || || || || || | ||||| | | || | ||| | || || ||||| Sbjct 1219350 CCTTGGACACCTATTCCTATCGGGCGATGTCGCATGTT-GCTCTTCCGTGCCTCAGGAAT 1219292 Query 69162 AGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTC 69221 ||| || | ||| | || || || ||| |||||||| | || || ||||| Sbjct 1219291 AGGGTAGTGATTTCTGTCGATGATGCGATTCAGATTTCGTGTCATGACCTTTACCACCGA 1219232 Query 69222 CTTTAGTTTGAGAAAATCAAAT--CGTCCATCTATA----ACAAACATATTCAGTGCTAC 69275 ||| || || | ||| |||| | | | |||| |||||| | || | || Sbjct 1219231 CTTCAGCTTCTCATAATTAAATGACTTTCTTCTAGGCTCCACAAACTTGGGAAGCGAAAC 1219172 Query 69276 AGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGC----ATATTGTATTATCTCTG 69331 || || || ||||| || || || || | | ||| | | | | | || | Sbjct 1219171 TGACGCAAGGTTACACACAGCGACTTCGTC----TCTGCCAGTAAACTCGACCACTTCGG 1219116 Query 69332 TACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGG 69391 | ||||| || | ||||| || ||||||||||| | ||| || ||||| || || || | Sbjct 1219115 TGCATAGGTTGCCGCATTTTATCGTCCCCAGATTCTTCTGGTTGCTCTTCTTATTGCAAG 1219056 Query 69392 CGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCC 69451 |||| ||||| | ||| ||||||| || ||||| ||||||| || | || | || Sbjct 1219055 CGTCTTTGTACATCATATACGGAGTGCCTGTTTCTATCTGAGCTTGCAATATCGCAAACC 1218996 Query 69452 AAACGACCCTAGCATTTATTACGGTCTTGTAACG--CTTCTCTTTTTCATATTGTGTATA 69509 | | | | |||| |||| || || ||| |||| ||| || | ||||| Sbjct 1218995 ACAGGTACTGAGCAGGTATTGTTTTCCTGCCACGTCCTTCCATTTCGTATTTCTCGTATA 1218936 Query 69510 TAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACAT 69569 |||| | ||| || || ||||| || || ||| || ||||| |||||||||||||| Sbjct 1218935 AAGCC--TTGAAATCGTCACCCCAGACCTCCGTCAAACCCGGACACTCATTTGGACACAT 1218878 Query 69570 CAATGACCA 69578 || | ||| Sbjct 1218877 TAAGGTCCA 1218869 Score = 104 bits (114), Expect = 3e-17 Identities = 304/463 (66%), Gaps = 8/463 (2%) Strand=Plus/Plus Query 68981 CAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTAT 69040 |||| || || || |||||||| | ||| |||| || | ||||||||| || |||| Sbjct 1181326 CAGCGAGCTCGCAGCTTGCCTCGAGGGCAGCGTAGTATACGCATTCGAAAATGTTTTTAT 1181385 Query 69041 TGAGATCTTGTG-CTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCC 69099 | | |||| || ||||| | || ||||| ||||| | | | || || || ||||| Sbjct 1181386 TTA-ATCTCCTGGCTTCTGGGCTGTCGAAGGGATACCGCAGCATCATGAACGCGTCTGCG 1181444 Query 69100 AATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGA 69159 | || ||||| || | ||||| || | || ||| || || ||||| || Sbjct 1181445 AGACCTTGAACACCCAGCCCGATCGGACGGTGCCTCAGGTTACTCCTGCGCGCTTCAGGG 1181504 Query 69160 ATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACG 69219 ||||| || || || | || || | ||| ||||| || | ||||| || || Sbjct 1181505 ATAGGGTAGTAGTTCCTGTCGATCACGCGATTCAGATTGCGTGTCGCGACTTTGACAACA 1181564 Query 69220 TCCTTTAGTTTGA-GAAAATCAAA----TCGTCCATCTAT-AACAAACATATTCAGTGCT 69273 | ||||||||| | || | ||| |||| | || |||| || | || | Sbjct 1181565 GCTTTTAGTTTGTCGTAATTGAAAGTCTTCGTTTCCCGATCAACATACTTCGGAAGGGAC 1181624 Query 69274 ACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTA 69333 | ||| || | || || || || || |||| | || || | | || |||||| Sbjct 1181625 AGAGACGCCAAGTTGCAGACAGCCACTTCATCCTTGCTGGCGTACTCAACAATTTCTGTA 1181684 Query 69334 CATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCG 69393 |||| ||| |||| |||||| || || || || | ||| || |||||| | || |||||| Sbjct 1181685 CATAAATTGCTACCTTTGATGGTGCCAAGGTTCTTCTGGTTGCTCTTTCTATTGCAGGCG 1181744 Query 69394 TCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATT 69436 |||||||| | || |||| || || || || ||||||| || Sbjct 1181745 TCCTTGTACATCATGTACGGCGTCCCTGTCTCGATCTGAGCTT 1181787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686901321280440