Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq12 102 1e-16 >seq12 Length=3345923 Score = 102 bits (112), Expect = 1e-16 Identities = 157/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 104902 CAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAA 104961 |||| |||| | || || || || || || ||| | ||||||||||| || || | || Sbjct 1219010 CAAG-CTCAGATAGAAACAGGCACTCCGTATATGATGTACAAAGACGCTTGCAATAAGAA 1219068 Query 104962 GAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGA 105021 ||| || || |||||| |||| ||| || | ||| || || || ||| | | || Sbjct 1219069 GAGCAACCAGAAGAATCTGGGGACGATAAAATGCGGCAACCTATGCACCGAAGTGGTCGA 1219128 Query 105022 ATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTA 105081 ||||| | || ||| || |||||||||||||| || ||| | | || ||||||| Sbjct 1219129 GTTTACTGGCAGAGACGAAGTCGCTGTGTGTAACCTTGCGTCAGTTTCGCTTCCCAAGTT 1219188 Query 105082 TGTGGATCC-AGAGACAAAGACATTTGATTATGAAAAACT 105120 |||||| || ||| | |||| ||||| ||||||| || || Sbjct 1219189 TGTGGAGCCTAGA-AGAAAGTCATTTAATTATGAGAAGCT 1219227 Score = 100 bits (110), Expect = 3e-16 Identities = 244/366 (67%), Gaps = 13/366 (4%) Strand=Plus/Minus Query 104902 CAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAA 104961 |||| |||| | |||||| || || || |||||| | ||||| |||||||| || ||| Sbjct 1181788 CAAG-CTCAGATCGAGACAGGGACGCCGTACATGATGTACAAGGACGCCTGCAATAGAAA 1181730 Query 104962 GAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGA 105021 ||| || || ||||| | || ||||| || |||| | ||||||||||| | || Sbjct 1181729 GAGCAACCAGAAGAACCTTGGCACCATCAAAGGTAGCAATTTATGTACAGAAATTGTTGA 1181670 Query 105022 ATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTA 105081 | | ||| ||||| |||||| || ||| | || || | | || || ||||| Sbjct 1181669 GTACGCCAGCAAGGATGAAGTGGCTGTCTGCAACTTGGCGTCTCTGTCCCTTCCGAAGTA 1181610 Query 105082 TGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGT 105141 ||| |||| || || ||||| || |||| || ||||| | | ||| ||| || Sbjct 1181609 TGTTGATCGGGAAACGAAGACTTTCAATTACGACAAACTAAAAGCTGTTGTCAAA---GT 1181553 Query 105142 CACCAAA---AACCTAAACAGAGTTATTGATAGAAATTTTTACCC---CGTTGAGACTGC 105195 | | | | || || || | || || || || || | ||||| | ||| || Sbjct 1181552 CGCGACACGCAATCTGAATCGCGTGATCGACAGGAACTACTACCCTATCCCTGA---AGC 1181496 Query 105196 TCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGT 105255 || | ||| |||| |||||||| || || || |||||||| |||||||| || | Sbjct 1181495 GCGCAGGAGTAACCTGAGGCACCGTCCGATCGGGCTGGGTGTTCAAGGTCTCGCAGACGC 1181436 Query 105256 ATTCAT 105261 ||||| Sbjct 1181435 GTTCAT 1181430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583254449748040