Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1 293 7e-74 seq7 205 3e-47 seq26 87.8 5e-12 >seq1 Length=11360811 Score = 293 bits (324), Expect = 7e-74 Identities = 974/1499 (65%), Gaps = 27/1499 (2%) Strand=Plus/Minus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 ||| | || || || | || || || || || || |||| ||| ||| ||||||| Sbjct 5454609 GCTGTGGGGATTGACCTGGGGACCACGTACTCGTGCGTTGGTGTGTGGAAAAATGACACG 5454550 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || ||||| ||||| || ||||| || ||| | || ||||| || ||||| || |||||| Sbjct 5454549 GTGGAAATCATTGCGAACGATCAGGGCAACCGCACTACGCCGTCGTACGTGGCGTTTACC 5454490 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || || || | |||| ||| | || ||||| |||| || || || | ||| Sbjct 5454489 GACACGGAACGACTTGTTGGGGATGCCGCGAAAAACCAAGTGGCGCGCAACCCGGAGAAT 5454430 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438 ||| |||| ||||| || || || ||||| | | || |||| || |||||| Sbjct 5454429 ACGATTTTCGATGCAAAACGCCTGATTGGCCGCAAGTTCGATGACCCCTCGGTGCAATCT 5454370 Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAG 349498 || | ||||| | || || | || | | | |||| || ||| | || || Sbjct 5454369 GACATGAAACACTGGCCGTTCAAAGTCATCGCTGGCAAAGGTGGCAAGCCACTAATCGAA 5454310 Query 349499 GTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCC-GAAGAAATTTCATCAATGGTTT 349556 || | || |||| || || ||| ||| |||| || || ||||| | ||||| Sbjct 5454309 GTGCATTACCAAGGAGAGACGAAATG--TTTCCACCCTGAGGAGATTTCTGCGATGGTGC 5454252 Query 349557 TAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTA 349616 | | || ||||| |||||| | ||| | || | ||| |||| | || || |||| Sbjct 5454251 TGGGCAAGATGAAAGAAATTTCGGAATCTTACCTTGGTCGCCCAGTGAAAGAAGCGGTTA 5454192 Query 349617 TTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCA 349676 | || || || || ||||| |||||| | ||||| || |||||||||||||||| | Sbjct 5454191 TCACGGTGCCCGCGTATTTCAATGATTCTCAGCGCCAAGCCACAAAAGATGCTGGCACGA 5454132 Query 349677 TTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATG 349736 |||| || || || || || |||| || || || || ||||| || |||||||| |||| Sbjct 5454131 TTGCAGGTTTGAACGTACTTCGAATTATCAACGAGCCAACTGCAGCTGCAATTGCGTATG 5454072 Query 349737 GGCTTGATAAAAT-GAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGT 349795 | || || || | ||| | || | | | | | ||||| ||| | |||||||| Sbjct 5454071 GTCTGGACAAGCGCGGGTGTGGA-GAGATGATTGTGTTGATTTTCGATATGGGTGGTGGC 5454013 Query 349796 ACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855 || ||||| || || || | || ||||||| || ||||| || || ||||| || Sbjct 5454012 ACCTTTGACGTCTCTCTCTTGACGATTGAAGACGGCATTTTCGAGGTGCGGGCAACGGCA 5453953 Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTT---TGTT 349912 || || || ||| | || || || || || || ||||| || || | | || ||| Sbjct 5453952 GGCGACACGCATTTAGGAGGCGAGGACTTCGACAATCGCCTGGT---GGACTTCTGTGTG 5453896 Query 349913 AAAGAATTTAAGCGTCAAGCTAAAATTGATATTGGAGATAATC-CTA------GAGCAAT 349965 | || || ||| | ||| | | || ||| || | | | | | || | Sbjct 5453895 CAGGACTTCAAGAGA-AAGAACAGAGGGAA---GGACATCAGCTCGAACAGCCGTGCTCT 5453840 Query 349966 GCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAAC 350025 |||||| || | ||| ||| ||||| || ||||| || | || || || || | Sbjct 5453839 GCGTCGTCTCCGGACTCAGTGCGAACGCGCGAAGCGCACCCTTTCCAGTAGCACGCAGGC 5453780 Query 350026 CTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGC 350085 | |||||||| || || || || || | || | || | || || |||| || Sbjct 5453779 GACCATTGAAATCGACTCGCTGTACGAAGGTATTGACTACTCTGTTTCCATCTCACGCGC 5453720 Query 350086 TCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAA-CAATGGATCCTGTGGAAAAAG 350144 || ||||||||| | || ||||| || || || | |||| || || || || | Sbjct 5453719 ACGTTTTGAAGAACTTTGCATGGA-CTACTTCCGTCACTCGCTGGACCCGGTCGAGAAGG 5453661 Query 350145 TATTAAAAGATGCAAAAA-TGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGT 350203 | || ||||| || | || | | |||| | ||||| || | || || || Sbjct 5453660 TGTTGAAAGACGCTGGTACTGACAAGCGCTCAGTAAGC-GAAGTTGTACTGGTCGGGGGG 5453602 Query 350204 TCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCT 350263 || || | ||||| ||| | || || || | | || || || || || |||||||| Sbjct 5453601 TCCACGAGAATTCCGAAAATCCAGCAATTCATTACCGAATTCTTCAACGGTAAAGAACCC 5453542 Query 350264 TCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATT 350323 | | || || || || |||||||| || || ||||| ||||| || || || ||||| Sbjct 5453541 TGCCGGTCCATCAACCCCGATGAAGCCGTCGCGTATGGCGCTGCAGTGCAAGCCGCTATT 5453482 Query 350324 TTATCTGGAAATAAGAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCCACTT 350383 | || | || ||| || | | | | | || || ||||| | |||||| Sbjct 5453481 ATCAAGGGTGTCACCAGCTCTCAAGTACAGCAGTTGCTCCTCCTCGATGTGGCGCCACTT 5453422 Query 350384 TCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACT 350443 || || ||| |||||||| | |||| || |||||| ||||||||| | |||| || Sbjct 5453421 TCCCTCGGACTAGAAACTGCCGGTGGCGTCATGACTACACTTATTCCTCGGAATACGACG 5453362 Query 350444 GTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACA 350503 | |||||||| ||||| |||| ||| | || | | ||||||||||| | ||| Sbjct 5453361 ATCCCTACAAAGAAGTCGCAAATCTTTACGACGTACTCTGATAATCAGCCCGGGGTGCTC 5453302 Query 350504 ATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTT 350563 ||||| || || |||||||||||| | | || ||||| || ||| | || |||| Sbjct 5453301 ATTCAGGTCTTCGAAGGTGAACGTCCACTGACGAAAGACAACAATCTTTTGGGTAAATTC 5453242 Query 350564 ACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGAT 350623 ||| || || || || || | |||||||| ||||||||||| | || || Sbjct 5453241 CACCTGGATGGCATCCCTCCCGCCCCCCGGGGAGTTCCGCAGATTGAAGTTACGTTTGAC 5453182 Query 350624 ATTGATTCAAATGGTATTTTAAATGTTACCGCAGTTGAAAAATCAAGTGGTAAAAGTAG 350682 | || |||| || ||| | | || || || | || ||||| | || ||||| || Sbjct 5453181 TTGGACGCAAACGGCATTATGAGCGTGACAGCCGAGGACAAATCCACCGGGAAAAGCAG 5453123 Score = 116 bits (128), Expect = 1e-20 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 140529 ACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCA 140588 || |||||||| || || || || || || || || || || | |||| || ||||| Sbjct 4842085 ACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCTGCCGTCTTCC 4842144 Query 140589 AGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGA 140648 |||||||| || || ||||| || | ||||| || || || || || || || || ||| Sbjct 4842145 AGTTGTTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTGA 4842204 Query 140649 ATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTT 140708 || || || || ||||| ||||| | || || | |||||||| || || | ||||| Sbjct 4842205 ATCTTTGCCTTCACATTTTCAATAGTGTCGGAAGCCTCAACTTCCAGGGTGATGGTCTTC 4842264 Query 140709 CCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || ||||||||||| Sbjct 4842265 CCTGTGAGGGTCTTGACGAAAATCTGCAT 4842293 >seq7 Length=4216856 Score = 205 bits (226), Expect = 3e-47 Identities = 182/228 (80%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 |||||| |||||||| | || | ||||||||||||||| || ||||| || || || || Sbjct 3942899 ACCACCTCGTAATCTCAACACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGA 3942840 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 || ||||| |||||||| || ||||| || |||||||| || | || || |||||||| Sbjct 3942839 TAGTGTTCTGCCATCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGTTGGTCAGGAGG 3942780 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || ||||||||||| ||||||||||| || ||||| || |||| |||||| || || || Sbjct 3942779 GATGCCTTCTTTATCTTGAATTTTAGCCTTCACATTCTCGATCGTATCAGACGGCTCTAC 3942720 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| ||||| | || ||||| || || ||||| |||||||| ||||| Sbjct 3942719 TTCTAGTGTGATGGTTTTTCCTGTAAGGGTTTTCACAAAAATTTGCAT 3942672 Score = 174 bits (192), Expect = 5e-38 Identities = 180/236 (76%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| || ||||| | || || || | ||||| || || || || ||||| || | Sbjct 3942678 TTTGCATCCCGCCACGCAGTCGTAACACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGT 3942619 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | ||||||||||||| ||||| || ||||| |||||||| ||||| | ||| ||||||| Sbjct 3942618 AGTCAGATAATGTTCTTCCATCATCCAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGAT 3942559 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| ||||| |||||||| || || ||||| | || || || || | || ||| || | Sbjct 3942558 CAGGTGGAATCCCTTCTTTGTCTTGTATTTTCGTCTTCACGTTCTCTACCGTATCCGACG 3942499 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 | || || || || |||| ||||| || ||||| ||||| || |||||||||||| Sbjct 3942498 GCTCCACCTCTAGCGTAATCGTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCATT 3942443 Score = 122 bits (134), Expect = 3e-22 Identities = 124/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| || ||||| |||| || || | ||||| || || ||||| ||||| || ||||| Sbjct 3942446 CATTCCTCCACGCAATCGAAGTACCAAGTGAAGTGTTGATTCTTTCTGAATGTTGTAATC 3942387 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || || |||| || || || ||||| ||||| ||||| || |||||||| || || || Sbjct 3942386 GGACAACGTTCTTCCGTCCTCCAGTTGCTTTCCTGCAAAAATAAGACGTTGTTGGTCTGG 3942327 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATC 140668 ||||| ||||| || ||||||||||| ||||| || || || Sbjct 3942326 CGGAATACCTTCCTTGTCCTGAATTTTTGCTTTCACGTTCTC 3942285 >seq26 Length=1977643 Score = 87.8 bits (96), Expect = 5e-12 Identities = 72/85 (85%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 423765 AGCATGGATGCCCGAGTGGTCTAAGGGGGCAGACTTAAGATCTGCTGG-CGAAAG-CCTC 423822 |||| ||||| ||||| ||||||||| | |||||| ||| |||| ||| ||| || || | Sbjct 1452228 AGCACGGATGGCCGAGCGGTCTAAGGCGCCAGACTCAAGTTCTGGTGGACGAGAGTCCGC 1452169 Query 423823 GTGGGTTCAAACCCCACTCCGTGCA 423847 ||||||||||| ||||||||||||| Sbjct 1452168 GTGGGTTCAAATCCCACTCCGTGCA 1452144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515237490234413