Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq12 138 1e-27 >seq12 Length=3345923 Score = 138 bits (152), Expect = 1e-27 Identities = 251/363 (69%), Gaps = 12/363 (3%) Strand=Plus/Plus Query 78859 AGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATG 78918 ||||||||||| | || || || || || || || | ||||||| ||||| | || | Sbjct 1181424 AGCATCATGAACGCGTCTGCGAGACCTTGAACACCCAGCCCGATCGGACGGTGCCTCAGG 1181483 Query 78919 TTGCTCTTTCGGGCCGCCTCGGTCGGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTA 78978 || ||| | || || | | | ||||| |||||| ||||| ||||| ||||| || Sbjct 1181484 TTACTCCTGCGCGCTTCAGGGATAGGGTAGTAGTTCCTGTCGATCACGCGATTCAGATTG 1181543 Query 78979 CGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATTTCCTTT---G 79035 || || |||| || | | | |||| || ||| ||| | ||| ||| | Sbjct 1181544 CGTGTCGCGACTTTGACAACAGCTTTTAGTTTGTCGTAATTGAAA-GTCTTCGTTTCCCG 1181602 Query 79036 ATGAAAGT----CGGTAGGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCT 79091 || || | ||| ||| |||| || |||| |||||| || ||| || ||| ||| Sbjct 1181603 ATCAACATACTTCGGAAGGGACAGAGACGCCAAGTTGCAGACAGCCACTTCATCCTTGCT 1181662 Query 79092 AGAAACCTCGATGATTTCTGTGCACAAATTAGACGAC--TTGATGGTGCCGATGTTCTTC 79149 | ||| | |||||||| || ||||| | || ||||||||||| | ||||||| Sbjct 1181663 GGCGTACTCAACAATTTCTGTACATAAATTG--CTACCTTTGATGGTGCCAAGGTTCTTC 1181720 Query 79150 TGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACC 79209 ||||||||||| || |||||||||||||| ||||||||||||||| ||||| | | Sbjct 1181721 TGGTTGCTCTTTCTATTGCAGGCGTCCTTGTACATCATGTACGGCGTCCCTGTCTCGATC 1181780 Query 79210 TGA 79212 ||| Sbjct 1181781 TGA 1181783 Score = 84.2 bits (92), Expect = 2e-11 Identities = 304/465 (65%), Gaps = 17/465 (4%) Strand=Plus/Minus Query 19789 AAGC-CAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGACGCCGCGAACGCCAAGT 19847 |||| ||| ||||||| || || ||||||||| |||||||||||| || ||| Sbjct 1181787 AAGCTCAGATCGAGACAGGGACGCCGTACATGATGTACAAGGACGCCTGCAATAGAAAGA 1181728 Query 19848 CAAATCAGAAGAACATCGGCGCGATCAA--GTCGTCCAACCTGTGTACTGAAATCATGGA 19905 || ||||||||| | ||| | ||||| || | ||| | ||||| ||||| | || Sbjct 1181727 GCAACCAGAAGAACCTTGGCACCATCAAAGGTAG--CAATTTATGTACAGAAATTGTTGA 1181670 Query 19906 GGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCCCTGTGCCTGCCGACTTT 19965 | ||| ||| || || || || || ||||||| |||| ||| |||| | Sbjct 1181669 GTACGCCAGCAAGGATGAAGTGGCTGTCTGCAACTTGGCGTCTCTGTCCCTTCCGAAGTA 1181610 Query 19966 CGTCAA---GGCCTCCT---CCTTCGACTTTGCCAAATTGTACGAGGTGACCCGGGTCGT 20019 || | || | | ||| | | | |||| | | | || | |||| Sbjct 1181609 TGTTGATCGGGAAACGAAGACTTTCAATTACGACAAACTAAAAGCTGTTGTCAAAGTCGC 1181550 Query 20020 CACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCCGACCGAGGCGGCGCGCAA 20079 || || |||||||||||||| ||||| |||||| ||||| | | | ||||||| Sbjct 1181549 GACACGCAATCTGAATCGCGTGATCGACAGGAACTACTACCCTATCCCTGAAGCGCGCAG 1181490 Query 20080 GTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCAT 20139 | || || | ||||| ||||||| | | || || || || || || |||| ||||| Sbjct 1181489 GAGTAACCTGAGGCACCGTCCGATCGGGCTGGGTGTTCAAGGTCTCGCAGACGCGTTCAT 1181430 Query 20140 GATGCT-CGGCCTCTCATTCGACGATCCC--AAGGCGCGCGAGCTCAACAAGGGCATCTT 20196 |||||| ||| || | |||||| | ||| ||| | | || | || || ||| || Sbjct 1181429 GATGCTGCGGTATC-CCTTCGAC-AGCCCAGAAGCCAGGAGA-TTAAATAAAAACATTTT 1181373 Query 20197 CGAGGCCGTGTACCACGCGGCCCTCCTGGAATCGTGCGAACTCGC 20241 ||| ||| ||| |||| |||||| || | ||||| ||||| Sbjct 1181372 CGAATGCGTATACTACGCTGCCCTCGAGGCAAGCTGCGAGCTCGC 1181328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548518827936240