Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq20 98.7 1e-15 seq6 84.2 2e-11 >seq20 Length=2389929 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 152095 GGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTG 152154 || || |||| |||||||||||| ||| || || ||| |||| |||||||| Sbjct 296572 GGTTCAAGGAAGTTGAGGTTGTTACTGCCAACAAATCGCTGGGCCATCGAGACAATCGTC 296513 Query 152155 CCCTGCAGACTCGCTTCACCGTGGTGATA--CGCCGTCTGCTCCGCGATGTATCCCGCCA 152212 |||||| |||||||| ||||| || || ||| | || |||| || ||| || || | Sbjct 296512 TGCTGCAGGCTCGCTTCGCCGTGATGGTATGCGCTGACT--TCCGAGACGTAGCCGGCGA 296455 Query 152213 ACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGC 152272 ||||||||| || || ||| | ||| || || || | || ||| | | ||||||| Sbjct 296454 GCTGCGCCACTTTGATCTCCTGCTTCATATTTTTTTTTATGCATGCGAAGAGGACCTTGC 296395 Query 152273 GCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 ||||| || ||| | ||||| | || || || || || |||| | |||| Sbjct 296394 GCTGGCCAGGCTTCCAGCCGTCGATCAGCTGCGGGATGGACCGCTCGGTGTC 296343 Score = 86.0 bits (94), Expect = 7e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 119075 CTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTCC 119134 ||||| | ||||| |||||| || ||||| ||||| ||||| ||||||||||| ||| Sbjct 278373 CTGAAGATGTTGGTTAGCTTCGCGCCGTAGCCGTTGCGACCGCCGGTCACGCGACACTCG 278314 Query 119135 TCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGA 119186 |||| ||||||| ||| |||| || || || || |||||||| |||| Sbjct 278313 CTATCGTCGTAGTTGTCGCTCGTCAGCAGCTGGCCGAAAATGAGCTCCGGGA 278262 >seq6 Length=4482429 Score = 84.2 bits (92), Expect = 2e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 80161 TGCTCCCGGTGAGGATTGAACTCACGACTTTTGGCACATAAGACCAACACTCTAACCATC 80220 ||||||||||| |||| |||| ||||||||| ||| ||||||||| || ||||||||| | Sbjct 3026759 TGCTCCCGGTGGGGATCGAACCCACGACTTTCGGCTCATAAGACCGACGCTCTAACCAAC 3026818 Query 80221 TGAGTTACG 80229 |||| |||| Sbjct 3026819 TGAGCTACG 3026827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547210042185800