Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1 134 2e-26 seq7 125 8e-24 seq12 116 4e-21 >seq1 Length=11360811 Score = 134 bits (148), Expect = 2e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || ||||| || || || || |||||| | Sbjct 4842293 ATGCAGATTTTCGTCAAGACCCTCACAGGGAAGACCATCACCCTGGAAGTTGAGGCTTCC 4842234 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| ||||||| || ||||| ||||||||||| || || || |||||| Sbjct 4842233 GACACTATTGAAAATGTGAAGGCAAAGATTCAAGACAAGGAGGGGATCCCCCCCGACCAG 4842174 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || || || || ||||| || || | | || || | ||||| || Sbjct 4842173 CAGAGGCTCATCTTCGCCGGCAAACAACTGGAAGACGGCAGAACTCTCTCCGACTACAAC 4842114 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614 |||| ||||||||||| |||||||| || Sbjct 4842113 ATCCAGAAGGAATCCACCCTTCATCTCGT 4842085 >seq7 Length=4216856 Score = 125 bits (138), Expect = 8e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || ||||| || || || || || || || || ||| | | Sbjct 3942672 ATGCAAATTTTTGTGAAAACCCTTACAGGAAAAACCATCACACTAGAAGTAGAGCCGTCT 3942731 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| |||||||||||||||| || || || || || ||||| ||||| Sbjct 3942732 GATACGATCGAGAATGTGAAGGCTAAAATTCAAGATAAAGAAGGCATCCCTCCTGACCAA 3942791 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || || || || || |||| | || ||| | ||||| || Sbjct 3942792 CAGAGGCTGATCTTTGCAGGGAAACAGCTGGAAGATGGCAGAACACTATCGGACTACAAC 3942851 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || ||||||||| | || ||| | | || ||||| Sbjct 3942852 ATTCAGAAGGAGTCTACTCTTCATTTGGTGTTGAGATTACGAGGTGG 3942898 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 27482 TGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTG 27541 |||| || ||||||||||||||||| || ||||| |||||||| || ||||| ||||||| Sbjct 3942292 TGAAAGCAAAAATTCAGGACAAGGAAGGTATTCCGCCAGACCAACAACGTCTTATTTTTG 3942351 Query 27542 CTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCA 27601 | || |||||||| ||||| | | || | | || || || | || || ||||| | Sbjct 3942352 CAGGAAAGCAACTGGAGGACGGAAGAACGTTGTCCGATTACAACATTCAGAAAGAATCAA 3942411 Query 27602 CTCTTCA 27608 | ||||| Sbjct 3942412 CACTTCA 3942418 >seq12 Length=3345923 Score = 116 bits (128), Expect = 4e-21 Identities = 273/403 (68%), Gaps = 18/403 (4%) Strand=Plus/Plus Query 80688 TGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGAT 80747 |||| |||||| | | | || |||||||||| |||| || || || ||||| || | Sbjct 1181402 TGGGCTGTCGAAGGGATACCGCAGCATCATGAACGCGTCTGCGAGACCTTGAACACCCAG 1181461 Query 80748 GGCGATCGGGCGGTGGCGCTTGTTCGATC-GCTCGGCCTCCGGAATTGGGTAAAAGTTAT 80806 ||||||| ||||| | | ||| | || || | || || || ||||| |||| Sbjct 1181462 CCCGATCGGACGGTGCCTCAGGTTACTCCTGCGCG-CTTCAGGGATAGGGTAGTAGTTCC 1181520 Query 80807 TATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCT--- 80863 | ||||| ||||| ||||| |||||||| | || |||| | | ||||| | Sbjct 1181521 TGTCGATCACGCGATTCAGATTGCGTGTCGCGACTTTGACAACAGCTTTTAGTTTGTCGT 1181580 Query 80864 ----GAAAGTCGAATTGGTTCCCCTTCA-CAAATGCCGGAAGGCTCAGGGACGCCAGATT 80918 ||||||| | | ||||| ||| || | ||||||| ||| ||||||| || Sbjct 1181581 AATTGAAAGTCT--TCGTTTCCCGATCAACATACTTCGGAAGGGACAGAGACGCCAAGTT 1181638 Query 80919 GCACACGGCCACCTCTTCA--GCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAA 80976 ||| || ||||| || || || ||| ||| || ||||| || || ||||| | Sbjct 1181639 GCAGACAGCCACTTCATCCTTGCTGGCGTA--CTCAACAATTTCTGTACATAAATTGCTA 1181696 Query 80977 GACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCAC 81036 || || || || ||||| |||||||| ||| ||||| ||||||||||| | Sbjct 1181697 CCTTTGATGGTGCCAAGGTTCTTCTGGTTGCTCTTTCTATTGCAGGCGTCCTTGTACATC 1181756 Query 81037 ATGTACGGGGTACCGGTCTCGACCTGTGACTTG-AGGATGGCG 81078 |||||||| || || ||||||| ||| | |||| | |||||| Sbjct 1181757 ATGTACGGCGTCCCTGTCTCGATCTGAG-CTTGTAATATGGCG 1181798 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 80035 CGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATA 80094 ||||| || ||||| |||| || ||||| || || | |||||||||| | |||||| Sbjct 1220286 CGCGTTCGAAGATAATACAAACCTGTCTTTAGTCCACGCCTCCAGCCGTAGAAGTGCATT 1220227 Query 80095 GAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAG 80154 ||| | ||||| || |||||||| ||||| |||||| || |||||||||||| | Sbjct 1220226 GAAGTAAGCTTGGCGTACGTGGGGTTGACCATGTGGATGTTAAGCGACTGAGACTGATCG 1220167 Query 80155 ATGAA 80159 || || Sbjct 1220166 ATAAA 1220162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570304190745520