Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq7 145 7e-30 seq1 116 3e-21 seq18 113 4e-20 >seq7 Length=4216856 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || |||||| | ||||| || || ||||| ||||| Sbjct 3942444 ATGCAGATTTTCGTGAAAACCCTAACTGGCAAGACGATTACGCTAGAGGTGGAGCCGTCG 3942503 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || || | |||| || || ||||| |||||||||||||| || ||||| ||||| Sbjct 3942504 GATACGGTAGAGAACGTGAAGACGAAAATACAAGACAAAGAAGGGATTCCACCTGATCAG 3942563 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||| || || ||| |||| || | || | || || |||||| Sbjct 3942564 CAGCGTTTGATCTTCGCTGGAAAGCAACTGGATGATGGAAGAACATTATCTGACTACAAC 3942623 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||| |||||| | || ||||| || || |||| || || || Sbjct 3942624 ATTCAGAAGGAATCGACCCTTCACTTGGTGTTACGACTGCGTGGCGGGAT 3942673 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| || || || || | || || || ||||| || ||||| Sbjct 3942672 ATGCAAATTTTTGTGAAAACCCTTACAGGAAAAACCATCACACTAGAAGTAGAGCCGTCT 3942731 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| |||| || || ||||||||||| ||||||||||| || || || ||| Sbjct 3942732 GATACGATCGAGAATGTGAAGGCTAAAATTCAAGATAAAGAAGGCATCCCTCCTGACCAA 3942791 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || ||||| ||||||| | || | || || |||||| Sbjct 3942792 CAGAGGCTGATCTTTGCAGGGAAACAGCTGGAAGATGGCAGAACACTATCGGACTACAAC 3942851 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| || | |||||||| ||| | || || ||||| Sbjct 3942852 ATTCAGAAGGAGTCTACTCTTCATTTGGTGTTGAGATTACGAGGTGG 3942898 Score = 102 bits (112), Expect = 7e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| ||||| || ||| |||| ||| | || ||||| || ||| Sbjct 3940615 ATGCAGATCTTCGTGAAAACACTGACTGGGAAGACTATCACTTTGGAGGTGGAGCCCTCC 3940674 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| || | || || ||||| |||||||| ||||| || |||||||||||| Sbjct 3940675 GATACGATCGAAAACGTGAAGGCGAAAATCCAAGACAAGGAAGGGATTCCACCCGATCAA 3940734 Query 27108 CAGCGT 27113 |||||| Sbjct 3940735 CAGCGT 3940740 Score = 87.8 bits (96), Expect = 2e-12 Identities = 118/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116 |||| || ||| ||||||||| ||||| ||||| || || || || ||||| ||| | Sbjct 3942285 GAGAACGTGAAAGCAAAAATTCAGGACAAGGAAGGTATTCCGCCAGACCAACAACGTCTT 3942344 Query 27117 ATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAACATTCAAAA 27175 || | || || || ||| |||| ||| | || |||| ||||||||||||||||| || Sbjct 3942345 ATTTTTGCAGGAAAGCAACTGGAGGACGGAA-GAACGTTGTCCGATTACAACATTCAGAA 3942403 Query 27176 GGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || | || ||||| | || ||||| || || || Sbjct 3942404 AGAATCAACACTTCACTTGGTACTTCGATTGCGTGGAGGAAT 3942445 >seq1 Length=11360811 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || || ||| | || || || ||||| || | ||| Sbjct 4842293 ATGCAGATTTTCGTCAAGACCCTCACAGGGAAGACCATCACCCTGGAAGTTGAGGCTTCC 4842234 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || ||| ||||||||||| || || || || ||||| || Sbjct 4842233 GACACTATTGAAAATGTGAAGGCAAAGATTCAAGACAAGGAGGGGATCCCCCCCGACCAG 4842174 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||||||||||| |||||||| | || | ||||| |||||| Sbjct 4842173 CAGAGGCTCATCTTCGCCGGCAAACAACTGGAAGACGGCAGAACTCTCTCCGACTACAAC 4842114 Query 27168 ATTCAAAAGGAGTCGACCTTACAT 27191 || || ||||| || ||| | ||| Sbjct 4842113 ATCCAGAAGGAATCCACCCTTCAT 4842090 >seq18 Length=2561326 Score = 113 bits (124), Expect = 4e-20 Identities = 211/305 (69%), Gaps = 4/305 (1%) Strand=Plus/Plus Query 135460 GACGCATGACCCGTTGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCA 135519 |||| ||||| || | ||||| || || || | |||||| | | | ||||| || ||||| Sbjct 1981671 GACGTATGACGCGCTATGGAATGCAGCGCAGCAGCAGCTAATGAGGGAAGGAAAGATGCA 1981730 Query 135520 CGGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGA 135579 ||| | | |||| ||||| ||||| || ||||| |||| ||| ||||||||| || Sbjct 1981731 CGGCTATCTGCGTATGTACTGGGCGAAGAAGATGCTGGAGTGGATGAAATCGCCTGCTGA 1981790 Query 135580 GGCGCTACAACACGCAATATTTTTTAATGATTACTACAGTTTAGATGG-ACGCGATTCAA 135638 ||| || || ||| ||| |||||| | ||||| | || || ||| ||| | | Sbjct 1981791 GGCACTTGCGGGAGCTATACATTTGAATGATAAATACAGCCTGGACGGGACG-GATCCCA 1981849 Query 135639 ATGGCTACGTAGGTTGTATGTGGTCTATTTGCGG-TGTACACGATCAAGGATGGAAGGAG 135697 | || ||||| || || |||||||| || |||| | | ||||| || | | ||| Sbjct 1981850 ACGGTTACGTCGGATGCATGTGGTCGATC-GCGGCTCTGCACGACCAGCCTTTCAGAGAG 1981908 Query 135698 CGCAAAGTGTTTGGCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAAT 135757 | | | ||| ||| || | ||||||||||| | ||||| ||| || || ||| Sbjct 1981909 AGACCCATATATGGGAAGGTTAGGTATATGAACTACGCTGGTTGCCAAAGGAAGTTCAAT 1981968 Query 135758 GTAAA 135762 ||||| Sbjct 1981969 GTAAA 1981973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434913664825920