Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq7 132 1e-25 >seq7 Length=4216856 Score = 132 bits (146), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 |||||||| ||||| || || ||||| || |||| || || || |||||||||||||| Sbjct 3942874 TGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGATAGTGTTCTGCCATCTTCCAGCTGT 3942815 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || ||||| ||||| || | |||||||||||||| | ||||| || || || || || Sbjct 3942814 TTCCCTGCAAAGATCAGCCTCTGTTGGTCAGGAGGGATGCCTTCTTTATCTTGAATTTTA 3942755 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||||| || ||||| || ||||| || || || || ||||| || ||||| || Sbjct 3942754 GCCTTCACATTCTCGATCGTATCAGACGGCTCTACTTCTAGTGTGATGGTTTTTCCTGTA 3942695 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 || || || ||||| | ||||| Sbjct 3942694 AGGGTTTTCACAAAAATTTGCAT 3942672 Score = 120 bits (132), Expect = 7e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| | || || || | |||||| || || ||||| || ||||| ||||| | | Sbjct 3942440 TCCACGCAATCGAAGTACCAAGTGAAGTGTTGATTCTTTCTGAATGTTGTAATCGGACAA 3942381 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || ||||| || ||||| ||||| ||||| || ||||| ||||||||||| || |||| Sbjct 3942380 CGTTCTTCCGTCCTCCAGTTGCTTTCCTGCAAAAATAAGACGTTGTTGGTCTGGCGGAAT 3942321 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTC 211045 |||||||||||||| || ||| ||||||||| || Sbjct 3942320 ACCTTCCTTGTCCTGAATTTTTGCTTTCACGTTCTC 3942285 Score = 93.3 bits (102), Expect = 1e-13 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 || || ||||| || || |||| ||||||||||| ||||| || |||||||||||| Sbjct 3940742 AGACGCTGTTGATCGGGTGGAATCCCTTCCTTGTCTTGGATTTTCGCCTTCACGTTTTCG 3940683 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 || || || ||| || ||||| | |||||| ||||| || || || || || || || Sbjct 3940682 ATCGTATCGGAGGGCTCCACCTCCAAAGTGATAGTCTTCCCAGTCAGTGTTTTCACGAAG 3940623 Query 211107 ACCTGCATTTT 211117 | ||||||||| Sbjct 3940622 ATCTGCATTTT 3940612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159139064225915