Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000727475.1_202014-07-15] 871 sequences; 124,404,968 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq67 127 5e-24 seq1 125 2e-23 seq7 122 2e-22 >seq67 Length=30047 Score = 127 bits (140), Expect = 5e-24 Identities = 110/135 (81%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 7728 TCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTAT 7787 ||||| ||||||| || || |||||| ||| ||||||||||||| ||||||||||| | Sbjct 985 TCTAGTCCTGGTAAGGTTTTTCGCGTTACATCGAATTAAACCACATGCTCCACCGCTTGT 1044 Query 7788 ACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA 7847 || | | |||||| || |||||||||| | ||||||| |||| |||||||| || ||| Sbjct 1045 ACGAGCCCCCGTCAATTCCTTTGAGTTTCACTCTTGCGGGCGTACTACTCAGGCGGGATA 1104 Query 7848 -TTTACGCGTTAGCT 7861 || ||||||||||| Sbjct 1105 CTTAACGCGTTAGCT 1119 >seq1 Length=11360811 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 225505 ACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCT 225564 || || || || |||||||| || |||| ||||| |||| | |||||| || ||||| Sbjct 4842085 ACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCTGCCGTCTTCC 4842144 Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGG 225624 || || || || |||||||| || | || |||||||| || || || ||||||||||| Sbjct 4842145 AGTTGTTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTGA 4842204 Query 225625 ATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTG 225684 |||||| ||||||| ||| || ||||| || | || || || | ||||| ||||| Sbjct 4842205 ATCTTTGCCTTCACATTTTCAATAGTGTCGGAAGCCTCAACTTCCAGGGTGATGGTCTTC 4842264 Query 225685 CCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || | || || | ||| | ||||| Sbjct 4842265 CCTGTGAGGGTCTTGACGAAAATCTGCAT 4842293 >seq7 Length=4216856 Score = 122 bits (134), Expect = 2e-22 Identities = 108/134 (81%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || || |||||||| || | |||||||||| ||| ||||| || || Sbjct 3942427 AGTACCAAGTGAAGTGTTGATTCTTTCTGAATGTTGTAATCGGACAACGTTCTTCCGTCC 3942368 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || || || ||||| ||||||||||| |||||||||||||||||||| Sbjct 3942367 TCCAGTTGCTTTCCTGCAAAAATAAGACGTTGTTGGTCTGGCGGAATACCTTCCTTGTCC 3942308 Query 225622 TGGATCTTTTGCTT 225635 || || |||||||| Sbjct 3942307 TGAAT-TTTTGCTT 3942295 Score = 114 bits (126), Expect = 3e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||| | || | ||| || || ||||| || || | ||||| || | || || Sbjct 3942665 ACGCAGTCGTAACACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGATAATGT 3942606 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| ||||| || || ||||| ||||||||||| | || || || || || ||||| || Sbjct 3942605 TCTTCCATCATCCAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGTGGAATCCC 3942546 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| |||||||| || || |||||| || | || || || | ||||| |||| Sbjct 3942545 TTCTTTGTCTTGTATTTTCGTCTTCACGTTCTCTACCGTATCCGACGGCTCCACCTCTAG 3942486 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||| ||||||||||| || | ||||| | ||| | |||||| Sbjct 3942485 CGTAATCGTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCATT 3942443 Score = 102 bits (112), Expect = 2e-16 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || || ||||| ||||| ||||| ||||||||||||||||| || |||||| |||| Sbjct 3940742 AGACGCTGTTGATCGGGTGGAATCCCTTCCTTGTCTTGGATTTTCGCCTTCACGTTTTCG 3940683 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAAC 225705 || || || |||| ||||| || || ||||| ||||| || |||| ||||| | ||| Sbjct 3940682 ATCGTATCGGAGGGCTCCACCTCCAAAGTGATAGTCTTCCCAGTCAGTGTTTTCACGAAG 3940623 Query 225706 ACTTGCATTTT 225716 | |||||||| Sbjct 3940622 ATCTGCATTTT 3940612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192517891724474